I'm a new user on cTAKES. I followed User Install Guide and add UMLS access rights. After I edited runctakesCPE.bat and runctakesCVD.bat, I got the following:
F:\apache-ctakes-4.0.0>set CTAKES_HOME=F:\apache-ctakes-4.0.0
F:\apache-ctakes-4.0.0>if exist "F:\apache-ctakes-4.0.0\bin\runctakesCVD.bat" goto okHome
F:\apache-ctakes-4.0.0>if exist "C:\Program Files\Java\jdk1.8.0_65\bin\java.exe" set PATH=C:\Program Files\Java\jdk1.8.0_65\bin;C:\Program Files\Java\jdk1.8.0_65\bin;C:\Program Files\Java\jdk1.8.0_65\ jre\bin;C:\ProgramData\Oracle\Java\javapath;C:\Program Files (x86)\Intel\iCLS Client\;C:\Program Fil es\Intel\iCLS Client\;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\System32\Wi ndowsPowerShell\v1.0\;C:\Program Files\Intel\Intel(R) Management Engine Components\DAL;C:\Program Fi les (x86)\Intel\Intel(R) Management Engine Components\DAL;C:\Program Files\Intel\Intel(R) Management Engine Components\IPT;C:\Program Files (x86)\Intel\Intel(R) Management Engine Components\IPT;c:\Pro gram Files (x86)\Hewlett-Packard\HP Performance Advisor;C:\Program Files\Microsoft\Web Platform Inst aller\;C:\Program Files (x86)\Microsoft ASP.NET\ASP.NET Web Pages\v1.0\;C:\Program Files (x86)\Windo ws Kits\8.0\Windows Performance Toolkit\;C:\Program Files\Microsoft SQL Server\110\Tools\Binn\;C:\Pr ogram Files\IDM Computer Solutions\UltraEdit;C:\Python27;C:\Program Files (x86)\MiKTeX 2.9\miktex\bi n\;C:\Program Files\MATLAB\R2015b\runtime\win64;C:\Program Files\MATLAB\R2015b\bin;C:\Program Files\ IBM\SPSS\Statistics\24\JRE\bin;C:\cygwin64\bin;C:\Program Files (x86)\Skype\Phone\;C:\Program Files (x86)\Google\Chrome\Application;C:\Program Files\Java\jdk1.8.0_65\bin;C:\Program Files\Java\jdk1.8.0 _65\jre\bin;C:\ProgramData\Oracle\Java\javapath;C:\Program Files (x86)\Intel\iCLS Client\;C:\Program Files\Intel\iCLS Client\;C:\windows\system32;C:\windows;C:\windows\System32\Wbem;C:\windows\System3 2\WindowsPowerShell\v1.0\;C:\Program Files\Intel\Intel(R) Management Engine Components\DAL;C:\Progra m Files (x86)\Intel\Intel(R) Management Engine Components\DAL;C:\Program Files\Intel\Intel(R) Manage ment Engine Components\IPT;C:\Program Files (x86)\Intel\Intel(R) Management Engine Components\IPT;c: \Program Files (x86)\Hewlett-Packard\HP Performance Advisor;C:\Program Files\Microsoft\Web Platform Installer\;C:\Program Files (x86)\Microsoft ASP.NET\ASP.NET Web Pages\v1.0\;C:\Program Files (x86)\W indows Kits\8.0\Windows Performance Toolkit\;C:\Program Files\Microsoft SQL Server\110\Tools\Binn\;C :\Program Files\IDM Computer Solutions\UltraEdit;C:\Python27;C:\Users\yi chen\AppData\Local\Programs \Git\cmd;C:\Users\yi chen\AppData\Local\Programs\EmEditor
F:\apache-ctakes-4.0.0>cd F:\apache-ctakes-4.0.0
F:\apache-ctakes-4.0.0>IF "" == "" GOTO NoParam
F:\apache-ctakes-4.0.0>echo Use the GUI to select the AE to load Use the GUI to select the AE to load
F:\apache-ctakes-4.0.0>java -Dctakes.umlsuser= "F:\apache-ctakes-4.0.0\desc\;F:\apache-ctakes-4.0.0\ resources\;F:\apache-ctakes-4.0.0\lib*" -Dlog4j.configuration=file:\F:\apache-ctakes-4.0.0\config\l og4j.xml -Xms512M -Xmx3g org.apache.uima.tools.cvd.CVD 0-cp The system cannot find the file specified.
F:\apache-ctakes-4.0.0>GOTO ChangeBack
Can anyone help to figure it? I really need your help. Thanks!
Answering this question for sake of people who get this issue in future.
@jhshi : The changes you made in runCVD.bat do not seem correct.
The documentation requires you to add your UMLS account username and password in every bat file (or sh file for dearest Linux users). Which means every cTAKES user has to create a UMLS account here.
This is done using the java cmd line arguments "-Dctakes.umlsuser" & " -Dctakes.umlspw". Look at my java invocation line from the runCVD.bat file below.
What you did was to pass the value of some PATH like variable to the umlsuser cmd line argument.