On this given server running Apache, mod_rewrite is executed prior to mod_auth. Normally not a critical issue except when you are trying to use the environmental variable, %{REMOTE_USER} - per .htaccess. In this scenario, it is undefined and unavailable to mod_rewrite. I have only seen this once before, and cannot recall the solution. It is related to server config (httpd.conf). Any ideas?
Apache mod_auth and mod_rewrite Order
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You need to move your rules to your vhost/server config, and not inside of a
<Directory>container. This makes it so the per-directory modules are applied first (e.g. mod_auth_*) before the per-server module (i.e. mod_rewrite).