I am using Virtual Box and trying to run bwa on the terminal. To align left and right reads against the reference I used 'bwa mem' it showed me an error stating "unrecognized command 'mem'". Is there a way I can get it separately or another way out?
bwa mem used. 'mem' being shown as unrecognized command
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I think you have an old version of bwa and you may want to install a newer one as bra mem is definitely a command in the latests version of the software.