The SettingsFileGenerator.xml file seems to have two purposes. One is to set the SSO Config and the other is to dynamically replace settings in the PortBindingsMaster.xml for each environment. I am replacing dozens of values in the PortBindingMaster.xml file that don't need to also be stored in the SSO config. Is there a standard way to specify which settings I want to be stored in the SSO config so I don't store a lot of extra values there?
Can SSO config only import selective SettingsFileGenerator.xml settings?
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Unfortunately, what you're asking is not directly supported. There a couple of workarounds though.
You can maintain a separate settings file for runtime only settings and use a custom CustomPostDeployTarget task to Exec SSOSettingsFileImport.exe with you runtime settings file.
Or, you can use a set of UpdateSSOConfigItem elements as referenced here: Deploy Configuration Settings into SSO.