Is there anyway to change certain web.xml parameters of an already deployed application in the glassfish?
Change Deployment descriptor web.xml on glassfish 3
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If you change directly in the file-system, no one will understand later, why and when the changes have been done. So this is bad!
But it's easy: Just change the web.xml of the deployed application and restart the glassfish domain. You will find the web.xml somewhere near
/PATH/TO/glassfish3/glassfish/domains/DOMAIN/applications/APP-NAME/WAR-NAME/WEB-INF/web.xml
if deployed in a standalone instance. Otherwise it is somewhere below the ..../nodes folder.
Edit: In a cluster environment, a sync from the deployment manager will override your changes.