When applying regularized logistic regression: I split my data into training, cross-validation and test sets. I want to apply regularization and am working on choosing the regularization parameter lambda. To do so, I try different values of lambda and fit the parameter theta of my hypothesis on the training set. Then, I choose the value of lambda that gives me the lowest cost function on the validation set. To do so, shall I compute the cost function of the validation set with the penalization term or without it?
Choosing the regularization parameter
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This is mixing up two things. You minimize the cost function (with regularization term) to pick the model parameters (for given hyperparameters like lambda). But then the parameters let you classify points in the validation set. And you measure how correctly the classification matches ground truth. You pick lambda that gives the most correct answers. The cost function with lambda plays no role at that stage.