Configuring OWIN on SSRS Portal

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I'm attempting to implement custom security for an SSRS2016 box. I have done this successfully in the past with asp.net forms authentication. In this scenario, I need to read and authenticate from an OWIN cookie. I can do this successfully in a test rig hosted in IIS, but when I move the code to the SSRS web host, the OWIN startup class is not called. Is there a way to configure the SSRS portal to bootstrap the OWIN settings?

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