I want to create AMI instance on EC2, where my data sitting on the AWS S3 in VHD/VMDK format. Could you please help me in how to convert VHD/VMDK to AMI through amazon SDK APIS, and how to transfer data from AWS S3 to AMI through amazon SDK API's
How to create AMI from VHD in AWS S3 storage
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You should use AWS VM Import/Export. You can find the steps (via CLI) in here and the API is ImportImage.