Currently I am ignoring unimportant discrepancies in beyond compare. I just realized that the upper and lower case belongs as unimportant discrepancies. Is there any way we can treat this as important discrepancy?
How to disable upper/lowercase as unimportant discrepancy in beyond compare
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Start your compare, select the menu option File..Session Settings....
In the dialog that pops up, click the Importance tab and make sure the check box labelled Character Case is checked.