I'm using PHP and Smarty for my website.For your reference I'm putting here the code snippet from smarty template alongwith the jQuery code:
<div class="spl-btn-wrap fl-left">
      <div class="spl-btn-in">
        <div class="spl-btn">
          <p id="parentCheckbox" class="custom-form"> 
            <input class="custom-check" type="checkbox" name="" id="ckbCheckAll">
            <a class="drop" href="#">more</a> 
          </p>
        </div> 
      </div>  
    </div>
<table class="tablesorter" cellpadding="0" cellspacing="0" border="0" id="tests_listing" width="100%">
{section name=tests loop=$all_tests}
<tr id="tests_listing-row-{$all_tests[tests].test_id}"><td class="dragHandle">
<td>
  <table width="100%" border="0" cellspacing="0" cellpadding="0" class="tbl-test" >
   <tr>
     <th align="left">
      <p class="custom-form"> 
        <input class="custom-check checkBoxClass" type="checkbox" name="" id="">
        <label>{$all_tests[tests].test_name}</label>
      </p>
</th>
</tr>
</table>
  </td></tr>
  {sectionelse}
</table>
{literal}
<script type="text/javascript" language="javascript">
$(document).ready(function()  { 
    $(".view_test_details").colorbox({width:800, href:$(this).attr('href')});
  $("#ckbCheckAll").click(function () { 
    if ($(this).is(':not(:checked)'))
      $(".ez-checkbox").removeClass("ez-checked");
    if($(this).is(':checked'))
      $(".ez-checkbox").addClass("ez-checked");
  });
  $(".checkBoxClass").click(function(){  
     var all = $('.checkBoxClass');
    if (all.length === all.filter(':checked').length) {
      //$("p#parentCheckbox div").addClass("ez-checked");
      $("#ckbCheckAll").prop("checked", true);
    } else {
      //$("p#parentCheckbox div").removeClass("ez-checked"); 
      $("#ckbCheckAll").prop("checked", false);
    }
    if (!$(this).prop("checked")){
      //$("p#parentCheckbox div").removeClass("ez-checked");
      $("#ckbCheckAll").prop("checked",false);
    }
  });
});      
</script>
{/literal}
Now the scenario is when the page loads completely the following code wraps around the checkbox as follows:
<div class="ez-checkbox">
<input id="" class="custom-check ez-hide" type="checkbox" name=""></input>
</div>
When the checkbox is selected the class named "ez-checked" added to the div as follows:
<div class="ez-checkbox ez-checked">
    <input id="" class="custom-check ez-hide" type="checkbox" name=""></input>
    </div>
Upon unchecking the checkbox the class get removed. I want to work on this basic idea of applying and removing "ez-checked" class. Now I want to add the typical Select all checkbox functionality. I've written code for it. But the issue is it is working for all checkboxes. I want to make it workable if few checkboxes are selected too. Can you help me to resolve my issue? Thanks in advance. If you need any further information I can provide you with the same.
 
                        
Try this (edited):
Uploaded a demo here:
http://jsfiddle.net/m7gzf/