I'm trying to apply fft
function to some columns of a dataframe that starts with 'EE'. I have a dataframe with 100000 rows and 119 columns; 3-92 cols will be used for calculation.
head(LiC13j_w20_dat_dat2)
# A tibble: 6 × 119
chr start EE85759 EE85761 EE85765 EE85769 EE85772 EE85773 EE85774 EE85777 EE85781 EE85785 EE85786 EE85788 EE85789 EE85790 EE85793 EE85794 EE85798 EE85799
<chr> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl>
1 chr4 1.55e8 0 -1 1 -1 0 -1 -5 -2 -1 1 1 -2 -1 -1 -1 -6 -3 -1
2 chr6 1.38e8 0 -2 0 -2 -4 -8 -4 -2 -1 -2 -1 -2 -1 -4 0 0 0 -1
3 chr11 7.37e7 0 -3 -2 -1 -1 -3 0 -1 -5 -1 -1 0 -3 -3 -1 -2 -1 -1
4 chr1 1.88e8 -2 0 2 -5 1 -2 0 -3 0 0 -3 0 -1 0 -2 1 1 -1
5 chr2 1.99e8 -1 1 -1 -2 -5 -1 0 -4 3 1 -5 3 -3 -1 -1 0 -2 -2
6 chr5 1.66e8 -1 -3 -1 -3 -2 -3 -1 -2 -2 -1 -5 -1 -1 -1 -2 -4 -1 -3
Using below script,
for(i in 3:92) {
log_read <- fft(LiC13j_w20_dat_dat2[, i])
LiC13j_w20_dat_dat2$fft[i] <- log_read
}
Or,
for (i in names(LiC13j_w20_dat_dat2)[grep("EE", names(LiC13j_w20_dat_dat2))]){
LiC13j_w20_dat_dat2[, paste0(i, "_fft")] <- fft(LiC13j_w20_dat_dat2[ , i] )
}
However, getting an error that
Error in fft(LiC13j_w20_dat_dat2[, i]) : non-numeric argument