I better know how to remove/disable all breakpoints at one click and how to remove specific breakpoints but is there any way to remove all breakpoints of single file in eclipse?
Example
I have 5 breakpoints in ServiceImpl.java and 7 breakpoints in DaoImpl.java now I don't want to debug ServiceImpl.java.
So, is there any way to simply remove only ServiceImpl.java file's all breakpoint?

try to select Debug then group by as I described in below image
Now you can select only the node of your file and disable.
One click disable, one click enable