I have a 3d image which I want to label. Typically I use from label from scipy.ndimage. I want to ask how do you handle anisotropy, the z-dimension is cut more coarsely than x and y.
My structuring element is like a ball:
from scipy.ndimage import label, generate_binary_structure
s = generate_binary_structure(3, 1)
labels, _ = label(img, structure=s)
I am looking at the plane above and below (apart from the current) to check for connecting elements