I'm going to use rasterio in python. I downloaded rasterio via
conda install -c conda-forge rasterio
But I cannot import it due to the following import error. I've read some related questions and I'm not sure if that's because the mixture of default and conda-forge channels. I'm completely new to this, and I'm wondering what's the next step for me. Thank you!
>>>import rasterio
Traceback (most recent call last):
File "<ipython-input-7-350e27267e59>", line 1, in <module>
import rasterio
File "/Users/miaoxinran/anaconda3/lib/python3.7/site-packages/rasterio/__init__.py", line 15, in <module>
from rasterio._base import (
ImportError: dlopen(/Users/miaoxinran/anaconda3/lib/python3.7/site-packages/rasterio/_base.cpython-37m-darwin.so, 2): Library not loaded: @rpath/libgif.7.dylib
Referenced from: /Users/miaoxinran/anaconda3/lib/libgdal.20.dylib
Reason: image not found
I add my conda info below in case it may help.
conda info
active environment : base
active env location : /Users/miaoxinran/anaconda3
shell level : 1
user config file : /Users/miaoxinran/.condarc
populated config files : /Users/miaoxinran/.condarc
conda version : 4.8.5
conda-build version : 3.18.8
python version : 3.7.1.final.0
virtual packages : __osx=10.15
base environment : /Users/miaoxinran/anaconda3 (writable)
channel URLs : https://repo.anaconda.com/pkgs/main/osx-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/r/osx-64
https://repo.anaconda.com/pkgs/r/noarch
package cache : /Users/miaoxinran/anaconda3/pkgs
/Users/miaoxinran/.conda/pkgs
envs directories : /Users/miaoxinran/anaconda3/envs
/Users/miaoxinran/.conda/envs
platform : osx-64
user-agent : conda/4.8.5 requests/2.22.0 CPython/3.7.1 Darwin/19.0.0 OSX/10.15
UID:GID : 501:20
netrc file : None
offline mode : False
conda list
# packages in environment at /Users/miaoxinran/anaconda3:
#
# Name Version Build Channel
_anaconda_depends 2019.03 py37_0
_ipyw_jlab_nb_ext_conf 0.1.0 py37_0
_tflow_select 2.3.0 mkl
absl-py 0.8.0 py37_0
affine 2.3.0 py_0 conda-forge
alabaster 0.7.12 py37_0
anaconda custom py37_1
anaconda-client 1.7.2 py37_0
anaconda-navigator 1.9.7 py37_0
anaconda-project 0.8.3 py_0
appnope 0.1.0 py37_0
appscript 1.1.0 py37h1de35cc_0
asn1crypto 0.24.0 py37_0
astor 0.8.0 py37_0
astroid 2.2.5 py37_0
astropy 3.2.1 py37h1de35cc_0
atomicwrites 1.3.0 py37_1
attrs 19.1.0 py37_1
babel 2.7.0 py_0
backcall 0.1.0 py37_0
backports 1.0 py_2
backports.functools_lru_cache 1.5 py_2
backports.os 0.1.1 py37_0
backports.shutil_get_terminal_size 1.0.0 py37_2
backports.tempfile 1.0 py_1
backports.weakref 1.0.post1 py_1
beautifulsoup4 4.7.1 py37_1
bitarray 0.9.3 py37h1de35cc_0
bkcharts 0.2 py37_0
blas 1.0 mkl
bleach 3.1.0 py37_0
blosc 1.16.3 hd9629dc_0
bokeh 1.2.0 py37_0
boost-cpp 1.70.0 hd59e818_1 conda-forge
boto 2.49.0 py37_0
boto3 1.15.1 pyh9f0ad1d_0 conda-forge
botocore 1.18.1 pyh9f0ad1d_0 conda-forge
bottleneck 1.2.1 py37h1d22016_1
bzip2 1.0.8 h1de35cc_0
c-ares 1.15.0 h1de35cc_1001
ca-certificates 2020.6.20 hecda079_0 conda-forge
cairo 1.14.12 hc4e6be7_4
certifi 2020.6.20 py37hc8dfbb8_0 conda-forge
cffi 1.12.3 py37hb5b8e2f_0
chardet 3.0.4 py37_1
click 7.0 py37_0
click-plugins 1.1.1 py_0 conda-forge
cligj 0.5.0 py_0 conda-forge
cloudpickle 1.2.1 py_0
clyent 1.2.2 py37_1
colorama 0.4.1 py37_0
conda 4.8.5 py37hc8dfbb8_1 conda-forge
conda-build 3.18.8 py37_0
conda-env 2.6.0 1
conda-package-handling 1.3.11 py37_0
conda-verify 3.4.2 py_1
contextlib2 0.5.5 py37_0
cryptography 2.5 py37hdbc3d79_1 conda-forge
curl 7.63.0 heae2a1f_1000 conda-forge
cycler 0.10.0 py37_0
cython 0.29.12 py37h0a44026_0
cytoolz 0.10.0 py37h1de35cc_0
dask 2.1.0 py_0
dask-core 2.1.0 py_0
dbus 1.13.6 h90a0687_0
deap 1.3.1 pypi_0 pypi
decorator 4.4.0 py37_1
defusedxml 0.6.0 py_0
distributed 2.1.0 py_0
docutils 0.14 py37_0
entrypoints 0.3 py37_0
et_xmlfile 1.0.1 py37_0
expat 2.2.6 h0a44026_0
fastcache 1.1.0 py37h1de35cc_0
ffmpeg 4.0 h01ea3c9_0
filelock 3.0.12 py_0
flask 1.1.1 py_0
fontconfig 2.13.0 h5d5b041_1
freetype 2.9.1 hb4e5f40_0
freexl 1.0.5 h0b31af3_1002 conda-forge
fribidi 1.0.5 h1de35cc_0
future 0.17.1 py37_0
gast 0.3.2 py_0
geos 3.6.2 h0a44026_1004 conda-forge
get_terminal_size 1.0.0 h7520d66_0
gettext 0.19.8.1 h15daf44_3
gevent 1.4.0 py37h1de35cc_0
giflib 5.1.7 h01d97ff_1 conda-forge
glib 2.56.2 hd9629dc_0
glob2 0.7 py_0
gmp 6.1.2 hb37e062_1
gmpy2 2.0.8 py37h6ef4df4_2
graphite2 1.3.13 h2098e52_0
graphviz 2.40.1 hefbbd9a_2
greenlet 0.4.15 py37h1de35cc_0
grpcio 1.16.0 py37h9011c5e_1000 conda-forge
h5py 2.8.0 py37h878fce3_3
harfbuzz 1.8.8 hb8d4a28_0
hdf4 4.2.13 0 conda-forge
hdf5 1.10.2 hfa1e0ec_1
heapdict 1.0.0 py37_2
html5lib 1.0.1 py37_0
icu 58.2 h4b95b61_1
idna 2.8 py37_0
imageio 2.5.0 py37_0
imagesize 1.1.0 py37_0
importlib_metadata 0.17 py37_1
intel-openmp 2019.4 233
ipykernel 5.1.1 py37h39e3cac_0
ipython 7.6.1 py37h39e3cac_0
ipython_genutils 0.2.0 py37_0
ipywidgets 7.5.0 py_0
isort 4.3.21 py37_0
itsdangerous 1.1.0 py37_0
jasper 2.0.14 h636a363_1
jbig 2.1 h4d881f8_0
jdcal 1.4.1 py_0
jedi 0.13.3 py37_0
jinja2 2.10.1 py37_0
jmespath 0.10.0 pyh9f0ad1d_0 conda-forge
joblib 0.13.2 py37_0
jpeg 9b he5867d9_2
json-c 0.13.1 h575e443_1002 conda-forge
json5 0.8.4 py_0
jsonschema 3.0.1 py37_0
jupyter 1.0.0 py37_7
jupyter_client 5.3.1 py_0
jupyter_console 6.0.0 py37_0
jupyter_core 4.5.0 py_0
jupyterlab 1.0.2 py37hf63ae98_0
jupyterlab_server 1.0.0 py_0
kealib 1.4.7 h40e48e4_6
keras 2.2.4 0
keras-applications 1.0.8 py_0
keras-base 2.2.4 py37_0
keras-preprocessing 1.1.0 py_1
keyring 18.0.0 py37_0
kiwisolver 1.1.0 py37h0a44026_0
krb5 1.16.2 h24a3359_1000 conda-forge
lazy-object-proxy 1.4.1 py37h1de35cc_0
libarchive 3.3.3 h786848e_5
libcurl 7.63.0 h76de61e_1000 conda-forge
libcxx 4.0.1 hcfea43d_1
libcxxabi 4.0.1 hcfea43d_1
libdap4 3.19.1 hae55d67_1000 conda-forge
libedit 3.1.20181209 hb402a30_0
libffi 3.2.1 h475c297_4
libgdal 2.2.4 h7b1ea53_2
libgfortran 3.0.1 h93005f0_2
libiconv 1.15 hdd342a3_7
libkml 1.3.0 hed7d534_1010 conda-forge
liblief 0.9.0 h2a1bed3_2
libnetcdf 4.6.1 h5e45101_3 conda-forge
libopencv 3.4.2 h7c891bd_1
libopus 1.3 h1de35cc_0
libpng 1.6.37 ha441bb4_0
libpq 10.6 hbe1e24e_1000 conda-forge
libprotobuf 3.9.2 hd9629dc_0
libsodium 1.0.16 h3efe00b_0
libspatialite 4.3.0a ha12ebda_19
libssh2 1.8.0 hf30b1f0_1003 conda-forge
libtiff 4.0.10 hcb84e12_2
libuuid 1.0.3 h6bb4b03_2
libvpx 1.7.0 h378b8a2_0
libxml2 2.9.9 hf6e021a_1
libxslt 1.1.33 h33a18ac_0
lightfm 1.15 pypi_0 pypi
llvm-openmp 4.0.1 hcfea43d_1
llvmlite 0.29.0 py37h98b8051_0
locket 0.2.0 py37_1
lxml 4.3.4 py37hef8c89e_0
lz4-c 1.8.1.2 h1de35cc_0
lzo 2.10 h362108e_2
markdown 3.1.1 py37_0
markupsafe 1.1.1 py37h1de35cc_0
matplotlib 3.1.0 py37h54f8f79_0
mccabe 0.6.1 py37_1
mistune 0.8.4 py37h1de35cc_0
mkl 2019.4 233
mkl-service 2.0.2 py37h1de35cc_0
mkl_fft 1.0.12 py37h5e564d8_0
mkl_random 1.0.2 py37h27c97d8_0
mlxtend 0.17.0 py_0 conda-forge
mock 3.0.5 py37_0
more-itertools 7.0.0 py37_0
mpc 1.1.0 h6ef4df4_1
mpfr 4.0.1 h3018a27_3
mpmath 1.1.0 py37_0
msgpack-python 0.6.1 py37h04f5b5a_1
multipledispatch 0.6.0 py37_0
navigator-updater 0.2.1 py37_0
nbconvert 5.5.0 py_0
nbformat 4.4.0 py37_0
ncurses 6.1 h0a44026_1
networkx 2.3 py_0
ninja 1.9.0 py37h04f5b5a_0
nltk 3.4.4 py37_0
nose 1.3.7 py37_2
notebook 6.0.0 py37_0
numba 0.44.1 py37h6440ff4_0
numexpr 2.6.9 py37h7413580_0
numpy 1.16.4 py37hacdab7b_0
numpy-base 1.16.4 py37h6575580_0
numpydoc 0.9.1 py_0
olefile 0.46 py37_0
opencv 3.4.2 py37h6fd60c2_1
openjpeg 2.3.1 hdc36067_1 conda-forge
openpyxl 2.6.2 py_0
openssl 1.0.2u h0b31af3_0 conda-forge
packaging 19.0 py37_0
pandas 0.24.2 py37h0a44026_0
pandoc 2.2.3.2 0
pandocfilters 1.4.2 py37_1
pango 1.42.4 h060686c_0
parso 0.5.0 py_0
partd 1.0.0 py_0
path.py 12.0.1 py_0
pathlib2 2.3.4 py37_0
patsy 0.5.1 py37_0
pcre 8.43 h0a44026_0
pep8 1.7.1 py37_0
pexpect 4.7.0 py37_0
pickleshare 0.7.5 py37_0
pillow 6.1.0 py37hb68e598_0
pip 19.1.1 py37_0
pixman 0.38.0 h1de35cc_0
pkginfo 1.5.0.1 py37_0
pluggy 0.12.0 py_0
ply 3.11 py37_0
poppler 0.65.0 ha097c24_1
poppler-data 0.4.9 1 conda-forge
proj4 5.0.1 h1de35cc_0
prometheus_client 0.7.1 py_0
prompt_toolkit 2.0.9 py37_0
protobuf 3.9.2 py37h0a44026_0
psutil 5.6.3 py37h1de35cc_0
ptyprocess 0.6.0 py37_0
py 1.8.0 py37_0
py-lief 0.9.0 py37h1413db1_2
py-opencv 3.4.2 py37h7c891bd_1
pycodestyle 2.5.0 py37_0
pycosat 0.6.3 py37h1de35cc_0
pycparser 2.19 py37_0
pycrypto 2.6.1 py37h1de35cc_9
pycurl 7.43.0.2 py37hdbc3d79_0
pydotplus 2.0.2 py37_1
pyflakes 2.1.1 py37_0
pygments 2.4.2 py_0
pylint 2.3.1 py37_0
pyodbc 4.0.26 py37h0a44026_0
pyopenssl 19.0.0 py37_0
pyparsing 2.4.0 py_0
pyqt 5.9.2 py37h655552a_2
pyrsistent 0.14.11 py37h1de35cc_0
pysocks 1.7.0 py37_0
pytables 3.4.4 py37h13cba08_0
pytest 5.0.1 py37_0
pytest-arraydiff 0.3 py37h39e3cac_0
pytest-astropy 0.5.0 py37_0
pytest-doctestplus 0.3.0 py37_0
pytest-openfiles 0.3.2 py37_0
pytest-remotedata 0.3.1 py37_0
python 3.7.1 h145921a_1000 conda-forge
python-dateutil 2.8.0 py37_0
python-libarchive-c 2.8 py37_11
python.app 2 py37_9
python_abi 3.7 1_cp37m conda-forge
pytorch 1.3.0 py3.7_0 pytorch
pytz 2019.1 py_0
pywavelets 1.0.3 py37h1d22016_1
pyyaml 5.1.1 py37h1de35cc_0
pyzmq 18.0.0 py37h0a44026_0
qt 5.9.7 h468cd18_1
qtawesome 0.5.7 py37_1
qtconsole 4.5.1 py_0
qtpy 1.8.0 py_0
rasterio 0.36.0 py37h0dff353_2
readline 7.0 h1de35cc_5
requests 2.22.0 py37_0
rope 0.14.0 py_0
ruamel_yaml 0.15.46 py37h1de35cc_0
s3transfer 0.3.3 py37hc8dfbb8_1 conda-forge
scikit-image 0.15.0 py37h0a44026_0
scikit-learn 0.23.1 pypi_0 pypi
scipy 1.5.0 pypi_0 pypi
seaborn 0.9.0 py37_0
send2trash 1.5.0 py37_0
setuptools 41.0.1 py37_0
simplegeneric 0.8.1 py37_2
singledispatch 3.4.0.3 py37_0
sip 4.19.8 py37h0a44026_0
six 1.12.0 py37_0
snappy 1.1.7 he62c110_3
snowballstemmer 1.9.0 py_0
snuggs 1.4.7 py_0 conda-forge
sortedcollections 1.1.2 py37_0
sortedcontainers 2.1.0 py37_0
soupsieve 1.8 py37_0
sphinx 2.1.2 py_0
sphinxcontrib 1.0 py37_1
sphinxcontrib-applehelp 1.0.1 py_0
sphinxcontrib-devhelp 1.0.1 py_0
sphinxcontrib-htmlhelp 1.0.2 py_0
sphinxcontrib-jsmath 1.0.1 py_0
sphinxcontrib-qthelp 1.0.2 py_0
sphinxcontrib-serializinghtml 1.1.3 py_0
sphinxcontrib-websupport 1.1.2 py_0
spyder 3.3.6 py37_0
spyder-kernels 0.5.1 py37_0
sqlalchemy 1.3.5 py37h1de35cc_0
sqlite 3.29.0 ha441bb4_0
statsmodels 0.10.0 py37h1d22016_0
stopit 1.1.2 pypi_0 pypi
sympy 1.4 py37_0
tbb 2019.8 h770b8ee_0 conda-forge
tblib 1.4.0 py_0
tensorboard 1.14.0 py37h80053f4_0
tensorflow 1.14.0 mkl_py37h085be34_0
tensorflow-base 1.14.0 mkl_py37h5a24fda_0
tensorflow-estimator 1.14.0 py_0
termcolor 1.1.0 py37_1
terminado 0.8.2 py37_0
testpath 0.4.2 py37_0
threadpoolctl 2.1.0 pypi_0 pypi
tk 8.6.8 ha441bb4_0
toolz 0.10.0 py_0
torchvision 0.4.1 py37_cpu pytorch
tornado 6.0.3 py37h1de35cc_0
tpot 0.11.5 pypi_0 pypi
tqdm 4.46.1 pypi_0 pypi
traitlets 4.3.2 py37_0
unicodecsv 0.14.1 py37_0
unixodbc 2.3.7 h1de35cc_0
update-checker 0.17 pypi_0 pypi
urllib3 1.24.2 py37_0
watermark 2.0.1 py_0 conda-forge
wcwidth 0.1.7 py37_0
webencodings 0.5.1 py37_1
werkzeug 0.15.4 py_0
wheel 0.33.4 py37_0
widgetsnbextension 3.5.0 py37_0
wrapt 1.11.2 py37h1de35cc_0
wurlitzer 1.0.2 py37_0
xerces-c 3.2.2 h4db8090_1003 conda-forge
xlrd 1.2.0 py37_0
xlsxwriter 1.1.8 py_0
xlwings 0.15.8 py37_0
xlwt 1.3.0 py37_0
xz 5.2.4 h1de35cc_4
yaml 0.1.7 hc338f04_2
zeromq 4.3.1 h0a44026_3
zict 1.0.0 py_0
zipp 0.5.1 py_0
zlib 1.2.11 h1de35cc_3
zstd 1.3.7 h5bba6e5_0
I'm completely new to this. Any suggestions will be appreciated!!
I've got some experience with rasterio, but I am not nearly a master with it. If I remember correctly, rasterio requires you to have installed the program GDAL(both binaries and python utilities), and some other dependencies listed on the PyPi page. I don't use conda at the moment, I like to use the regular python 3.8 installer with pip. Given what I'm seeing with your installation, I would uninstall rasterio and follow a different installation procedure.
I follow the instructions listed here: https://rasterio.readthedocs.io/en/latest/installation.html
This page also has separate instructions for those using Anaconda.
The GDAL installation is by far the most annoying but once it's done, the hard part is over. The python utilities for both rasterio and gdal can be found here:
https://www.lfd.uci.edu/~gohlke/pythonlibs/#gdal
The second link is also provided on the PyPi page but I like to keep it bookmarked because there's a lot of good resources there!