Is it safe to delete unused Application Insights resources from the Azure Portal?

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We have a number of Application Insights resources, most of which were created automatically when App Services were created. Most of them are not being used. Is it safe to delete the Application Insights resources without affecting the rest of the application?

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Yes it is, app insights resources are separate services in their own right, and only tied to your application by the application Id (or "key") that's published in the app insights resource blade.

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Check that no application is linked to it and if yes, you can remove it safely without any issues.