Issue with rewrite url and hash scrolling

Question

I am building a site using Foundation 5, PHP, HTML5 and CSS. I am using the Magellan Nav component from Foundation and it works as expected.

The issue I am having is that when I click on a nav link instead of just scrolling and adding a hash to the current url, it changes the hash of the window location but it also removes the current section by using (I think) the base href.

I tried changing the href of the Magellan links to ./habitaciones/#xxxxx instead of just #xxxxx, but then the script stops working and the smooth scroll doesn't work.

Is it an .htaccess setting, changing the base href or I should modify the magellan script?

My .htaccess is as follows: RewriteEngine On

RewriteRule         ^/?$                    index.php       [L]
RewriteRule         ^habitaciones/?$        habitaciones.php    [L]

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