Is there a way that I can sort table rows by a specified column (e.g. username), reassign its it's primary key values and then replace the table content with the sorted values?
mySQL: Physical Sorting
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Yes, MySQL has a way to determine the table sorting of the rows in the file. If your table is a MyISAM type you can run:
The table will be now sorted by username. This will fix the order of rows in the file, the file itself might be fragmented in the filesystem, and you can't address that with an ALTER TABLE. From the manual:
However if you mean that you want to rearrange a numeric primary key, so that the first user in the sorted list will have 1, 2 and so on, then, just don't do that. Never touch primary keys once assigned.