Possibility to Ignore warning in pipeline?

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Here at the project we've set our projects to treat warnings as errors, but when setting that option on a BizTalk project we've noticed we had the following warning:

Stage 'Validate' has multiple 'X' components.

It is by design we put 2 the same components on the same pipeline. We were wondering if we could disable these warnings in c# you can do something like this with your code #pragma warning disable 0649

Is there any possibility to ignore these warnings in a pipeline?

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There is no way to suppress BizTalk projects warning. All you can do is to avoid them