After adding a custom startup command as per the docs I began receiving error rsync: rename ... -> ...: No such file or directory (2). The first deployment worked but consecutive deployments failed. Upon further inspection I observed that the startup script was locked and indicated permission denied when opening. This was because I included apache2ctl -D FOREGROUND which is blocking and held the startup script open.
rsync: rename ... -> ...: No such file or directory (2) Azure Linux App Service
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It appears that somewhere along the way oryx was updated to automatically append apache start and the azure docs don't seem to indicate this fact. So simply do NOT include
apache2ctl -D FOREGROUNDin your startup script and you should be fine. Note I'm using PHP 7.4 in linux and I specified the startup command through the portal Configuration - General Settings (not via cli).