I have a Java program which does not use any AWS services and solely communicates with a DBaaS outside of AWS, in my case IBM's Cloudant DBaaS. To host this java program on an AWS EC2 instance would I still be required to use the AWS SDK for Java or AWS Toolkit for Eclipse to develop the program?
Running Java Program on AWS (Amazon Web Services)
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You certainly don't need to use the SDK. You might find the Eclipse toolkit useful, depending on what you want to do with your EC2 instance, but probably the AWS web interface is enough for you.