Trying to refer a project not mentioned in .classpath

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I am trying to setup EclEmma Code coverage in my eclipse. When I am trying to run JUNIT4 from "Coverage As" I am getting an error.

SOME_PRE_EXISTED_JAR_I_HAD-1.0-SNAPSHOT.jar which is referenced by the classpath does not exist

I have verified the .classpath of the project but the jar is not mentioned there. Also checked all the dependent project classpath as well. Tried clean and fresh build also.

Is there any master .classpath file which I need to edit?

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