Wait for set of qsub jobs to complete before next command

Question

Since the resource limit in the cluster I use, I submitted a bunch of jobs by using for loop in bash. I want to wait for all the jobs in pbs to complete before next command. The link here seems to solve my problem Wait for set of qsub jobs to complete but I am still confused what I should put after -cwd if I don't have next job script to run but some simple bash commands

Here is for loop to submit pbs task

for i in `seq 1 10`; do
if [ "$i"==10 ]; then
    EndLine=$((SeqNum*2))
fi
EndLine=$((StartLine-1+(EachFile+1)*2));
NewFile='StHeBC2-'$i'.fasta'
sed -n "$StartLine,$EndLine p" StHeBC2.fasta > $NewFile
StartLine=$((EndLine+1))
JobFile='StHeBC2-'$i'.sh'

    echo "
    #!/bin/bash
    #PBS -l ncpus=8
    #PBS -l mem=8GB
    #PBS -l nodes=4
    #PBS -l walltime=120:00:00
    #PBS -m bea
    #PBS -W umask=33

    cd $PBS_O_WORKDIR
    TransDecoder -t $NewFile -m 15 --search_pfam Pfam-A.hmm --API --CPU 8
    " > $JobFile

    qsub $JobFile
done

I want to summarize the output of TransDecoder using some basic command cat/cut etc after all JobFiles are done in pbs, like

cat test-*.fasta.transdecoder.pep > test.fasta.transdecoder.pep

Anyone can help? Thank you