allen-sdk get_flourescence_timeStamps

Question

I believe I am downloading the NWB files properly as I am able to get the df/F traces and stimuli information without trouble. However, I am receiving an error when I try to call "get_running_speed":

AttributeError: 'BrainObservatoryNwbDataSet' object has no attribute 'get_flourescence_timeStamps'

I receive the same error when I call the "get_fourescence_timeStamps" function as well. I have updated the allen sdk packages, so I should be working with the most current version of the software.

Is this a problem anyone else can replicate?

Answer 1

Is the spelling in your question correct? get_flourescence_timeStamps with the capital 'S' is not a function. Neither is get_fourescence_timeStamps with a missing l.

Here's where that function is called inside of get_running_speed:

https://github.com/AllenInstitute/AllenSDK/blob/master/allensdk/core/brain_observatory_nwb_data_set.py#L807

It looks like it's spelled correctly. Here's the definition of get_fluorescence_timestamps:

https://github.com/AllenInstitute/AllenSDK/blob/master/allensdk/core/brain_observatory_nwb_data_set.py#L256

Could you post a small code snippet that reproduces your error?