I am having this weird issue when joining two audio parts together in audacity, any ideas/suggestions on how to correct this?. (see pictures below).
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Did you cross-fade at the join? The most likely cause of a "spike" in frequency content would be a discontinuity in the audio signal. Discontinuities, which includes abrupt starts or stops, will generate transients, which usually sound like clicks. By cross-fading, you can eliminate the discontinuity.