I am having a lot of trouble in R calculating the area of home range of an animal. I thought once I produced a home range (if I've done it correctly) calculating the area would be easy, but no
I've pasted some of the code I've been trying. I wonder would anyone have any insight?
# Load package
library(adehabitat)
#Load file Frodo
dd <- read.csv(file.choose(), header = T)
# Plot the home range
xy <- dd[,c("X","Y")]
id <- dd[,"name"]
hr<- mcp(xy,id,percent=95)
plot(hr)
points(xy[xy$id=="frodo",])
#Great. Home range produced. Now calculate area
area <- mcp.area(xy, id,percent = 95),
# Result 2.287789e-09 Ha. Way to small. Maybe it doesnt like Lat / Long.
# Will try and convert coordinates into M or Km
# Load map project
library(mapproj)
x<-mapproject(t$X,t$Y,projection="mercator")
# Its converted it to something but its not M's or Km's.
# I'll try and run it anyway
xy <- x[,c("X","Y")]
# incorrect number of dimensions
# Ill try Project 4
library(proj4)
xy <- dd[,c("X","Y")]
tr <- ptransform(xy/180*pi, '+proj=latlong +ellps=sphere',
'+proj=merc +ellps=sphere')
View(tr)
# There seems to be a Z column filled with 0's.
# It that going to affect anything?
# Let's look at the data
plot(tr)
# Looks good, Lets try and create a home range
xy <- tr[,c("x","y")]
# 'incorrect number of dimensions'
No idea what the problem is. Don't know if I'm on the right track or doing something completely wrong
In order to calculate area you need your points in a projected coordinate systems (area in long/lat would just be units of degree). The type of projection you use is going to have a big effect on the resulting area. For instance the Mercator projection distorts area away from the Equator -- you might want to look into the best equal-area projection for your location. I am going to answer the programming part of your question, once you find the right projections to use you can substitute them in.