How can I ignore some directories in Doxygen?

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I tried Doxygen to see how it documents a code.
The big problem I encountered is that it scans all the subdirectories, however I need to avoid some of them because not needed in the final documentation (they are also inappropriate because not direct parts of my work).
I think it's possible from the Expert tab of the Doxygen's wizard, but I'm a newbie and I don't understand how to set them.
Finally, what happens to the references to the directories excluded (i.e. references to functions, variables, etc...)?

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