I'm trying to download automatically all the Klebsiella pneumoniae genomes with biopython. Apparently now there are Size(Mb): 5.68232 Plasmids: 6 Assemblies: 10650. Please I have tried with the function Entrez.esearch. using this link https://www.ncbi.nlm.nih.gov/genome/browse#!/prokaryotes/815/
how to download automatically complete genomes with biopython on ncbi
114 Views Asked by Yad.yos At
0
There are 0 best solutions below
Related Questions in BIOPYTHON
- Biopython Entrez wanting to access /root/.config in Django app
- TypeError: 'str' object is not callable - When filling database
- How to extract short sequence using window with specific step size?
- exit code 11 in biopython
- How is this python script copying into the final output file?
- How to extract short sequence based on step size?
- Find Substring of Trie Keys
- getting records which are different from two fastq files
- choosing reads with Hamming distance zero
- reporting the best alignment with pairwise2
- Using Biopython SeqIO.convert over an entire directory
- How to download pubmed articles and read them?
- Issue with parsing publication data from PubMed with Entrez
- Updating a dictionary within a function
- searching for sequences in a FASTA format
Related Questions in NCBI
- Why doesn't rsync work when connecting to NCBI's FTP server home page?
- PSIPRED, how to install and make it work?
- ete3: How to get taxonomic rank names from taxonomy id?
- Blast+ Local Configuration: How to configure nt and nr databases?
- Downloading Protein Sequences of multiple Organisms
- Return values from a Python Entrez dictionary of dictionaries
- Searching Entrez based on paper title
- Biopython bioSQL Unable to remove database using server.remove_database('dbname')
- How do I configure blast+ to access databases on an external hard drive?
- Download all NCBI PubMed IDs based on a tag
- Is there an easy way to download genomes in fasta format from NCBI using Python?
- I'm having difficulty using Beautiful Soup to scrape data from an NCBI website
- how to download automatically complete genomes with biopython on ncbi
- Setting the version number in an NCBI c++ toolkit app
- How to extract the first hit elements from an XML NCBI BLAST file?
Trending Questions
- UIImageView Frame Doesn't Reflect Constraints
- Is it possible to use adb commands to click on a view by finding its ID?
- How to create a new web character symbol recognizable by html/javascript?
- Why isn't my CSS3 animation smooth in Google Chrome (but very smooth on other browsers)?
- Heap Gives Page Fault
- Connect ffmpeg to Visual Studio 2008
- Both Object- and ValueAnimator jumps when Duration is set above API LvL 24
- How to avoid default initialization of objects in std::vector?
- second argument of the command line arguments in a format other than char** argv or char* argv[]
- How to improve efficiency of algorithm which generates next lexicographic permutation?
- Navigating to the another actvity app getting crash in android
- How to read the particular message format in android and store in sqlite database?
- Resetting inventory status after order is cancelled
- Efficiently compute powers of X in SSE/AVX
- Insert into an external database using ajax and php : POST 500 (Internal Server Error)
Popular Questions
- How do I undo the most recent local commits in Git?
- How can I remove a specific item from an array in JavaScript?
- How do I delete a Git branch locally and remotely?
- Find all files containing a specific text (string) on Linux?
- How do I revert a Git repository to a previous commit?
- How do I create an HTML button that acts like a link?
- How do I check out a remote Git branch?
- How do I force "git pull" to overwrite local files?
- How do I list all files of a directory?
- How to check whether a string contains a substring in JavaScript?
- How do I redirect to another webpage?
- How can I iterate over rows in a Pandas DataFrame?
- How do I convert a String to an int in Java?
- Does Python have a string 'contains' substring method?
- How do I check if a string contains a specific word?