How to run the latest Docker version of Nextclade on COVID input fasta?

Question

I try to run the following Shell code:

 sudo docker run -it --rm nextstrain/nextclade:latest nextclade run --dataset-name 'sars-cov-2' - 
 -output-all  covid19.fasta # fasta file has the data I want to process

Nothing could be processed, changed the flags and options, nothing happens... Do you know how to run it in a proper way on the Linux Mint, can you advise a tutorial on this latest version, current documentation describes the older versions, Python and Deb installations are not working properly too. Thanks.

Answer 1

I have coped on my own: nobody replied me, all in winter hibernation or because I am a Russian invader, I don`t know why...who cares....

       sudo docker run -it --rm=True -v $PWD:/data   -u $(id -u):$(id -g) 
        nextstrain/nextclade:latest nextclade run  -d "sars-cov-2" 
       ./data/covid19.fasta  --output-all  ./data/NextcladeResults