How to speed up reading files of a project in eclipse

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I have a liferay 6.2 project with thousand files in source folder I use eclipse IDE to develop and it has a annoyed issue: each time I click a folder in eclipse, it take long time to open the folder to see files and subfolders I have config the eclipse.ini of eclipse to tuning eclipse performance but it does not have any effect. Please me the suggestion to speedup eclipse

Bellow is the content of eclipse.ini

-startup
plugins/org.eclipse.equinox.launcher_1.3.0.v20140415-2008.jar
--launcher.library
plugins/org.eclipse.equinox.launcher.win32.win32.x86_64_1.1.200.v20140603-1326
-product
org.eclipse.epp.package.jee.product
--launcher.defaultAction
openFile
--launcher.XXMaxPermSize
2048M
-showsplash
org.eclipse.platform
--launcher.XXMaxPermSize
4096m
--launcher.defaultAction
openFile
--launcher.appendVmargs
-vmargs
-Dosgi.requiredJavaVersion=1.6
-Xms2048m
-Xmx4096m
-Xverify:none
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