I tried creating a dissimilarity matrix for a large data set and received an error stating that the number of unique sequences exceeded the allowed maximum. Is there a way to expand this limit?
dist_om <- seqdist(States_Wide.seq,
method = "OM",
indel= 1.0,
sm= costmatrix)
Error:
[!!] seqcost: 'with.missing' set as FALSE as 'seqdata' has no non-void missing values
[>] creating 9x9 substitution-cost matrix using 2 as constant value
[>] 74326 sequences with 9 distinct states
[>] checking 'sm' (size and triangle inequality)
Error: 51253 unique sequences exceeds max allowed of 46340