I am looking for how FROH (inbreeding level) change with age, island and year are random. I got the following result and got NA for p value of intercept, what might be the cause of it and how to interpret in such case?? is use of perm.lmer function wrong here??
permmod1<- perm.lmer(FROH ~ age + (1|island) + (1|year) , data = Ad_Data, nperm = 1000, type = "regression", progress = F)
> permmod1
Factor LRT beta t p
1 (Intercept) 3159.75993 0.030081868 6.408866 NA
2 age 13.51311 -0.001078063 -2.835235 0.003
> summary(permmod1)
Factor LRT beta t p
Length:2 Min. : 13.51 Min. :-0.001078 Min. :-2.8352 Min. :0.003
Class :character 1st Qu.: 800.07 1st Qu.: 0.006712 1st Qu.:-0.5242 1st Qu.:0.003
Mode :character Median :1586.64 Median : 0.014502 Median : 1.7868 Median :0.003
Mean :1586.64 Mean : 0.014502 Mean : 1.7868 Mean :0.003
3rd Qu.:2373.20 3rd Qu.: 0.022292 3rd Qu.: 4.0978 3rd Qu.:0.003
Max. :3159.76 Max. : 0.030082 Max. : 6.4089 Max. :0.003
NA's :1
I looked for data, there is no any NA value, could not figure out whats going on.