Hi I have the following installations on archlinux:
server:
sudo pacman -S openmpi
cd ~/.ssh
ssh-keygen -t rsa
cp id_rsa.pub authorized_keys
chmod 600 authorized_key
sssh-copy-id miniserver
sudo vi /etc/ssh/sshd_config: Add the following lines
PubkeyAuthentication yes
RSAAuthentication yes
sudo pacman -S ntp
sudo vi /etc/ntp.conf: Add the following lines
server 0.arch.pool.ntp.org iburst
server 1.arch.pool.ntp.org iburst
server 2.arch.pool.ntp.org iburst
server 3.arch.pool.ntp.org iburst
tos orphan 15
logfile /var/log/ntp.log
sudo ntpd -u ntp:ntp
sudo systemctl start ntpd.service
sudo systemctl enable ntpd.service
sudo pacman -S nfs-utils
mkdir ~/sharedfolder
chmod 777 ~/sharedfolder
sudo vi /etc/exports:
/home/vorlket/sharedfolder miniserver(rw,sync)
sudo exportfs -arv
sudo systemctl start nfs-server.service
sudo systemctl enable nfs-server.service
miniserver:
sudo pacman -S openmpi
cd ~/.ssh
ssh-keygen -t rsa
cp id_rsa.pub authorized_keys
chmod 600 authorized_key
sssh-copy-id server
sudo vi /etc/ssh/sshd_config:
PubkeyAuthentication yes
RSAAuthentication yes
sudo pacman -S ntp
sudo vi /etc/ntp.conf: Add the following lines
server 192.168.1.3
sudo systemctl start ntpd.service
sudo systemctl enable ntpd.service
sudo pacman -S nfs-utils
mkdir ~/sharedfolder
chmod 777 ~/sharedfolder
sudo vi /etc/fstab:
server:/home/vorlket/sharedfolder /home/vorlket/sharedfolder nfs _netdev,noauto,x-systemd.automount,x-systemd.mount-timeout=10,timeo=14,x-systemd.idle-timeout=1min 0 0
sudo systemctl daemon-reload
sudo systemctl restart remote-fs.target
I tried to run the following and got an error:
[vorlket@server ~]$ mpirun -host server,miniserver -np 4 /home/vorlket/sharedfolder/mpi-prime
--------------------------------------------------------------------------
ORTE was unable to reliably start one or more daemons.
This usually is caused by:
* not finding the required libraries and/or binaries on
one or more nodes. Please check your PATH and LD_LIBRARY_PATH
settings, or configure OMPI with --enable-orterun-prefix-by-default
* lack of authority to execute on one or more specified nodes.
Please verify your allocation and authorities.
* the inability to write startup files into /tmp (--tmpdir/orte_tmpdir_base).
Please check with your sys admin to determine the correct location to use.
* compilation of the orted with dynamic libraries when static are required
(e.g., on Cray). Please check your configure cmd line and consider using
one of the contrib/platform definitions for your system type.
* an inability to create a connection back to mpirun due to a
lack of common network interfaces and/or no route found between
them. Please check network connectivity (including firewalls
and network routing requirements).
--------------------------------------------------------------------------
mpi-prime.c:
[vorlket@server ~]$ cat /home/vorlket/mpiprac/mpi-prime.c
# include <math.h>
# include <mpi.h>
# include <stdio.h>
# include <stdlib.h>
# include <time.h>
int main ( int argc, char *argv[] );
int prime_number ( int n, int id, int p );
void timestamp ( );
/******************************************************************************/
int main ( int argc, char *argv[] )
/******************************************************************************/
/*
Purpose:
MAIN is the main program for PRIME_MPI.
Discussion:
This program calls a version of PRIME_NUMBER that includes
MPI calls for parallel processing.
Licensing:
This code is distributed under the GNU LGPL license.
Modified:
07 August 2009
Author:
John Burkardt
*/
{
int i;
int id;
int ierr;
int n;
int n_factor;
int n_hi;
int n_lo;
int p;
int primes;
int primes_part;
double wtime;
n_lo = 1;
n_hi = 1048576;
n_factor = 2;
/*
Initialize MPI.
*/
ierr = MPI_Init ( &argc, &argv );
/*
Get the number of processes.
*/
ierr = MPI_Comm_size ( MPI_COMM_WORLD, &p );
/*
Determine this processes's rank.
*/
ierr = MPI_Comm_rank ( MPI_COMM_WORLD, &id );
if ( id == 0 )
{
timestamp ( );
printf ( "\n" );
printf ( "PRIME_MPI\n" );
printf ( " C/MPI version\n" );
printf ( "\n" );
printf ( " An MPI example program to count the number of primes.\n" );
printf ( " The number of processes is %d\n", p );
printf ( "\n" );
printf ( " N Pi Time\n" );
printf ( "\n" );
}
n = n_lo;
while ( n <= n_hi )
{
if ( id == 0 )
{
wtime = MPI_Wtime ( );
}
ierr = MPI_Bcast ( &n, 1, MPI_INT, 0, MPI_COMM_WORLD );
primes_part = prime_number ( n, id, p );
ierr = MPI_Reduce ( &primes_part, &primes, 1, MPI_INT, MPI_SUM, 0,
MPI_COMM_WORLD );
if ( id == 0 )
{
wtime = MPI_Wtime ( ) - wtime;
printf ( " %8d %8d %14f\n", n, primes, wtime );
}
n = n * n_factor;
}
/*
Terminate MPI.
*/
ierr = MPI_Finalize ( );
/*
Terminate.
*/
if ( id == 0 )
{
printf ( "\n");
printf ( "PRIME_MPI - Master process:\n");
printf ( " Normal end of execution.\n");
printf ( "\n" );
timestamp ( );
}
return 0;
}
/******************************************************************************/
int prime_number ( int n, int id, int p )
/******************************************************************************/
/*
Purpose:
PRIME_NUMBER returns the number of primes between 1 and N.
Discussion:
In order to divide the work up evenly among P processors, processor
ID starts at 2+ID and skips by P.
A naive algorithm is used.
Mathematica can return the number of primes less than or equal to N
by the command PrimePi[N].
N PRIME_NUMBER
1 0
10 4
100 25
1,000 168
10,000 1,229
100,000 9,592
1,000,000 78,498
10,000,000 664,579
100,000,000 5,761,455
1,000,000,000 50,847,534
Licensing:
This code is distributed under the GNU LGPL license.
Modified:
21 May 2009
Author:
John Burkardt
Parameters:
Input, int N, the maximum number to check.
Input, int ID, the ID of this process,
between 0 and P-1.
Input, int P, the number of processes.
Output, int PRIME_NUMBER, the number of prime numbers up to N.
*/
{
int i;
int j;
int prime;
int total;
total = 0;
for ( i = 2 + id; i <= n; i = i + p )
{
prime = 1;
for ( j = 2; j < i; j++ )
{
if ( ( i % j ) == 0 )
{
prime = 0;
break;
}
}
total = total + prime;
}
return total;
}
/******************************************************************************/
void timestamp ( void )
/******************************************************************************/
/*
Purpose:
TIMESTAMP prints the current YMDHMS date as a time stamp.
Example:
31 May 2001 09:45:54 AM
Licensing:
This code is distributed under the GNU LGPL license.
Modified:
24 September 2003
Author:
John Burkardt
Parameters:
None
*/
{
# define TIME_SIZE 40
static char time_buffer[TIME_SIZE];
const struct tm *tm;
size_t len;
time_t now;
now = time ( NULL );
tm = localtime ( &now );
len = strftime ( time_buffer, TIME_SIZE, "%d %B %Y %I:%M:%S %p", tm );
printf ( "%s\n", time_buffer );
return;
# undef TIME_SIZE
}
What have I missed and/or done wrong here? I have run out of idea on what can be possible problems. The compiled program (with mpicc) on the sharedfolder runs ok on each individual machine.
Thanks for help in advance.