As mentioned in Google Developers' article, it is now possible to recompress APK files using zopfli by running zipalign -z. In my case, a 200 KB reduction is observed on a 5.1 MB APK file. 
Normally I build the APK using a custom shell script, by running gradle assembleRelease. 
I want to run zipalign -z <the final apk> after the above command. However, zipalign is located in the build-tools/<build tools version> directory, which I can't locate it except by pulling out the <build tools version> from the build.gradle file and constructing the path manually.
Is it possible to run zipalign using the gradle command that automatically run the zipalign on the correct build-tools directory without me having to reconstuct the path?
For example a command such as gradle runBuildTools zipalign -z $FINAL_APK $FINAL_APK.out
 
                        
The article that you linked to has been updated with the gradle task to add the zopfli compression to the end of the assembleRelease task.