Sphinx merging command failed: rake ts:merge fails while indexer command succeeds

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Sphinx: 2.3.2-beta Thinking Sphinx: 4.4.1

When we run bundle rake ts:merge INDEX_FILTER=artcile, we get the following error:

The Sphinx merging command failed:

Command:indexer --config "config/sphinx.conf" --merge article_core artcile_delta --merge-dst-range sphinx_deleted 0 0 --rotate

Status:  2

However, we get a successful merge when we run the same indexer command that TS is trying to run. Any idea why this could be happening?

Note: For certain reasons we are not running searchd, we are only indexing

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