Question

Nextflow: Script of python don't save output

score 1.3k · Answer 1 · 2020-09-28 19:16:30

1.3k

Views

Nextflow: Script of python don't save output

Published on 28 September 2020 at 19:16

score 1.4k · Answer 2 · 2020-09-30 12:57:20

1.4k

Views

channel checks as empty even if it has content

Published on 30 September 2020 at 12:57

score 265 · Answer 3 · 2020-10-23 13:26:28

265

Views

Nextflow - Channel.watchPath() method

Published on 23 October 2020 at 13:26

score 222 · Answer 4 · 2020-10-22 23:15:10

222

Views

Nexflow: structured inputs with files

Published on 22 October 2020 at 23:15

score 67 · Answer 5 · 2023-10-17 15:16:44

67

Views

How to channel output of one process as input to the next process in Nextflow?

Published on 17 October 2023 at 15:16

score 103 · Answer 6 · 2023-10-12 09:28:30

103

Views

Nextflow script to check adapter content and run trimmomatic

Published on 12 October 2023 at 09:28

score 131 · Answer 7 · 2023-10-16 06:04:48

131

Views

Nextflow - Multiqc process per sample instead of processing all the samples output together

Published on 16 October 2023 at 06:04

score 161 · Answer 8 · 2023-10-16 16:43:22

161

Views

Nextflow errors running on HPC: /bin/bash: .command.run: No such file or directory

Published on 16 October 2023 at 16:43

score 142 · Answer 9 · 2023-10-18 22:46:08

142

Views

how to chain Channel.fromFilePairs from one process to another process

Published on 18 October 2023 at 22:46

score 66 · Answer 10 · 2023-10-23 10:29:26

66

Views

How to instruct `splitCsv` to split by any whitespaces

Published on 23 October 2023 at 10:29

score 59 · Answer 11 · 2023-11-01 12:00:19

59

Views

group outputs by extension and chain one of these for next process

Published on 01 November 2023 at 12:00

score 49 · Answer 12 · 2023-10-30 19:26:16

49

Views

Nextflow - Google Batch Network options

Published on 30 October 2023 at 19:26

score 50 · Answer 13 · 2023-10-26 03:41:24

50

Views

how to do splitFastq by file number instead of read num in nextflow

Published on 26 October 2023 at 03:41

score 102 · Answer 14 · 2023-11-01 18:31:15

102

Views

Passing results from within a process into a conditional workflow in nextflow

Published on 01 November 2023 at 18:31

score 144 · Answer 15 · 2023-11-02 09:39:13

144

Views

Nextflow error: Missing output files in a process

Published on 02 November 2023 at 09:39

score 42 · Answer 16 · 2023-11-14 02:49:06

42

Views

Azure Batch with Nextflow "Cannot create work-dir"

Published on 14 November 2023 at 02:49

score 22 · Answer 17 · 2023-11-14 10:04:21

22

Views

Running NextFlow pipeline in Jenkins

Published on 14 November 2023 at 10:04

score 42 · Answer 18 · 2023-11-16 02:04:39

42

Views

Nextflow examples don't show expected output

Published on 16 November 2023 at 02:04

score 48 · Answer 19 · 2023-11-23 15:04:22

48

Views

Nextflow Process `MULTIMETRICS` declares 3 input channels but 5 were specified

Published on 23 November 2023 at 15:04

score 155 · Answer 20 · 2023-11-16 20:15:31

155

Views

How to obtain files from a directory path channel in nextflow

Published on 16 November 2023 at 20:15

List Question

Nextflow: Script of python don't save output

channel checks as empty even if it has content

Nextflow - Channel.watchPath() method

Nexflow: structured inputs with files

How to channel output of one process as input to the next process in Nextflow?

Nextflow script to check adapter content and run trimmomatic

Nextflow - Multiqc process per sample instead of processing all the samples output together

Nextflow errors running on HPC: /bin/bash: .command.run: No such file or directory

how to chain Channel.fromFilePairs from one process to another process

How to instruct `splitCsv` to split by any whitespaces

group outputs by extension and chain one of these for next process

Nextflow - Google Batch Network options

how to do splitFastq by file number instead of read num in nextflow

Passing results from within a process into a conditional workflow in nextflow

Nextflow error: Missing output files in a process

Azure Batch with Nextflow "Cannot create work-dir"

Running NextFlow pipeline in Jenkins

Nextflow examples don't show expected output

Nextflow Process `MULTIMETRICS` declares 3 input channels but 5 were specified

How to obtain files from a directory path channel in nextflow

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