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Using python to compare differences in strings from an input fastq file

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#python #fastq #sequencing
391
Views

Bash: Converting 4 columns of text interleaved lines (tab-delimited columns to FASTQ file)

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577
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Using Biopython SeqIO.convert over an entire directory

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#python #biopython #fastq
192
Views

applying the same command to multiple files in multiple subdirectories

Published on
#python #bash #fastq
138
Views

Parse file and use some of the fields as variables using the header as name in bash

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#bash #sed #while-loop #separator #fastq
258
Views

FASTQ sequence record does not begin with @NAME line error

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#bioinformatics #fastq
449
Views

Delete an item from a dictionary generated by SeqIO.index

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#python #dictionary #bioinformatics #biopython #fastq
3.6k
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Convert FASTQ ASCII to decimal and hexadecimal in R

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#r #ascii #fastq
189
Views

assign file names dynamically to match directory name

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963
Views

Read same extension multiple files in one directory in Perl

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143
Views

QFileDialog "destroys" the name of the files

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#c++ #qt #bioinformatics #fastq
797
Views

Read FASTQ file into a AWS Glue Job Script

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#amazon-web-services #pyspark #fastq #aws-glue-spark
1.1k
Views

In a fastq file, how do I change the sequence headers to the file name and a unique identifier?

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#bash #awk #fastq
1.5k
Views

python dictionary, make every odd number line to key and even number line to value from a file

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#python #dictionary #fasta #fastq
304
Views

How can I make my Python script faster?

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#python #performance #bioinformatics #fastq
832
Views

regex: matching several patterns derived from a simple string

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#python #regex #d #fastq
178
Views

Two variable in one for loop in bash

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#bash #shell #loops #for-loop #fastq
97
Views

Sed print between two matches, and replace with information

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#regex #bash #sed #fastq
420
Views

Error in changing fastq header and written back with BioPython

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#python #bioinformatics #biopython #fastq
244
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Getting reads from one fastq file that are not found in another fastq file

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#bioinformatics #biopython #fastq

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