Question

Using python to compare differences in strings from an input fastq file

score 182 · Answer 1 · 2015-06-12 16:13:28

182

Views

Using python to compare differences in strings from an input fastq file

Published on 12 June 2015 at 16:13

score 335 · Answer 2 · 2015-06-20 23:51:54

335

Views

Bash: Converting 4 columns of text interleaved lines (tab-delimited columns to FASTQ file)

Published on 20 June 2015 at 23:51

score 534 · Answer 3 · 2015-06-26 14:44:08

534

Views

Using Biopython SeqIO.convert over an entire directory

Published on 26 June 2015 at 14:44

score 146 · Answer 4 · 2014-11-19 16:14:19

146

Views

applying the same command to multiple files in multiple subdirectories

Published on 19 November 2014 at 16:14

score 93 · Answer 5 · 2014-12-01 11:46:40

93

Views

Parse file and use some of the fields as variables using the header as name in bash

Published on 01 December 2014 at 11:46

score 208 · Answer 6 · 2017-09-12 21:50:35

208

Views

FASTQ sequence record does not begin with @NAME line error

Published on 12 September 2017 at 21:50

score 400 · Answer 7 · 2017-09-13 04:03:51

400

Views

Delete an item from a dictionary generated by SeqIO.index

Published on 13 September 2017 at 04:03

score 3.5k · Answer 8 · 2011-02-17 05:03:20

3.5k

Views

Convert FASTQ ASCII to decimal and hexadecimal in R

Published on 17 February 2011 at 05:03

score 137 · Answer 9 · 2013-08-21 19:13:38

137

Views

assign file names dynamically to match directory name

Published on 21 August 2013 at 19:13

score 913 · Answer 10 · 2013-08-21 21:26:55

913

Views

Read same extension multiple files in one directory in Perl

Published on 21 August 2013 at 21:26

score 127 · Answer 11 · 2013-09-03 16:19:25

127

Views

QFileDialog "destroys" the name of the files

Published on 03 September 2013 at 16:19

score 761 · Answer 12 · 2020-09-30 14:47:26

761

Views

Read FASTQ file into a AWS Glue Job Script

Published on 30 September 2020 at 14:47

score 1.1k · Answer 13 · 2020-10-14 23:52:48

1.1k

Views

In a fastq file, how do I change the sequence headers to the file name and a unique identifier?

Published on 14 October 2020 at 23:52

score 1.4k · Answer 14 · 2014-01-05 18:09:58

1.4k

Views

python dictionary, make every odd number line to key and even number line to value from a file

Published on 05 January 2014 at 18:09

score 287 · Answer 15 · 2014-12-04 22:00:55

287

Views

How can I make my Python script faster?

Published on 04 December 2014 at 22:00

score 816 · Answer 16 · 2014-12-12 18:31:22

816

Views

regex: matching several patterns derived from a simple string

Published on 12 December 2014 at 18:31

score 164 · Answer 17 · 2014-12-10 22:07:20

164

Views

Two variable in one for loop in bash

Published on 10 December 2014 at 22:07

score 81 · Answer 18 · 2014-12-19 10:39:18

81

Views

Sed print between two matches, and replace with information

Published on 19 December 2014 at 10:39

score 403 · Answer 19 · 2014-12-22 03:49:52

403

Views

Error in changing fastq header and written back with BioPython

Published on 22 December 2014 at 03:49

score 229 · Answer 20 · 2023-10-26 20:38:40

229

Views

Getting reads from one fastq file that are not found in another fastq file

Published on 26 October 2023 at 20:38

List Question

Using python to compare differences in strings from an input fastq file

Bash: Converting 4 columns of text interleaved lines (tab-delimited columns to FASTQ file)

Using Biopython SeqIO.convert over an entire directory

applying the same command to multiple files in multiple subdirectories

Parse file and use some of the fields as variables using the header as name in bash

FASTQ sequence record does not begin with @NAME line error

Delete an item from a dictionary generated by SeqIO.index

Convert FASTQ ASCII to decimal and hexadecimal in R

assign file names dynamically to match directory name

Read same extension multiple files in one directory in Perl

QFileDialog "destroys" the name of the files

Read FASTQ file into a AWS Glue Job Script

In a fastq file, how do I change the sequence headers to the file name and a unique identifier?

python dictionary, make every odd number line to key and even number line to value from a file

How can I make my Python script faster?

regex: matching several patterns derived from a simple string

Two variable in one for loop in bash

Sed print between two matches, and replace with information

Error in changing fastq header and written back with BioPython

Getting reads from one fastq file that are not found in another fastq file

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