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20
Devhide
2025-01-04 20:39:54
218
Views
Using python to compare differences in strings from an input fastq file
Published on
04 January 2025 at 20:39
#python
#fastq
#sequencing
382
Views
Bash: Converting 4 columns of text interleaved lines (tab-delimited columns to FASTQ file)
Published on
01 January 2025 at 21:36
#bash
#awk
#bioinformatics
#fastq
568
Views
Using Biopython SeqIO.convert over an entire directory
Published on
30 December 2024 at 13:08
#python
#biopython
#fastq
184
Views
applying the same command to multiple files in multiple subdirectories
Published on
03 January 2025 at 12:53
#python
#bash
#fastq
128
Views
Parse file and use some of the fields as variables using the header as name in bash
Published on
03 January 2025 at 12:56
#bash
#sed
#while-loop
#separator
#fastq
247
Views
FASTQ sequence record does not begin with @NAME line error
Published on
03 January 2025 at 12:49
#bioinformatics
#fastq
438
Views
Delete an item from a dictionary generated by SeqIO.index
Published on
03 January 2025 at 12:49
#python
#dictionary
#bioinformatics
#biopython
#fastq
3.6k
Views
Convert FASTQ ASCII to decimal and hexadecimal in R
Published on
03 January 2025 at 12:47
#r
#ascii
#fastq
178
Views
assign file names dynamically to match directory name
Published on
03 January 2025 at 12:48
#bash
#fastq
953
Views
Read same extension multiple files in one directory in Perl
Published on
03 January 2025 at 12:50
#perl
#loops
#fastq
138
Views
QFileDialog "destroys" the name of the files
Published on
03 January 2025 at 12:42
#c++
#qt
#bioinformatics
#fastq
787
Views
Read FASTQ file into a AWS Glue Job Script
Published on
03 January 2025 at 12:44
#amazon-web-services
#pyspark
#fastq
#aws-glue-spark
1.1k
Views
In a fastq file, how do I change the sequence headers to the file name and a unique identifier?
Published on
03 January 2025 at 12:57
#bash
#awk
#fastq
1.5k
Views
python dictionary, make every odd number line to key and even number line to value from a file
Published on
03 January 2025 at 12:57
#python
#dictionary
#fasta
#fastq
298
Views
How can I make my Python script faster?
Published on
03 January 2025 at 12:40
#python
#performance
#bioinformatics
#fastq
826
Views
regex: matching several patterns derived from a simple string
Published on
03 January 2025 at 12:51
#python
#regex
#d
#fastq
173
Views
Two variable in one for loop in bash
Published on
03 January 2025 at 12:42
#bash
#shell
#loops
#for-loop
#fastq
90
Views
Sed print between two matches, and replace with information
Published on
03 January 2025 at 12:50
#regex
#bash
#sed
#fastq
413
Views
Error in changing fastq header and written back with BioPython
Published on
03 January 2025 at 12:51
#python
#bioinformatics
#biopython
#fastq
237
Views
Getting reads from one fastq file that are not found in another fastq file
Published on
03 January 2025 at 12:55
#bioinformatics
#biopython
#fastq
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