Question

Selecting top taxa in phyloseq without having multiple unidentified

score 35 · Answer 1 · 2024-03-12T20:38:43.493000

35

Views

Selecting top taxa in phyloseq without having multiple unidentified

Published on 12 March 2024 at 20:38

score 32 · Answer 2 · 2024-03-08T20:12:41.703000

32

Views

how to prevent ggplot `geom_ridgeline_gradient` to mess up plot after specifying `group` aesthetics

Published on 08 March 2024 at 20:12

score 54 · Answer 3 · 2024-03-08T16:50:15.103000

54

Views

Facet Taxa axis in Phyloseq heatmap

Published on 08 March 2024 at 16:50

score 20 · Answer 4 · 2024-03-04T10:07:47.707000

20

Views

Phyloseq object, merge samples

Published on 04 March 2024 at 10:07

score 25 · Answer 5 · 2024-02-19T14:20:21.013000

25

Views

How to add convex hulls to beta diversity graphs using phyloseq

Published on 19 February 2024 at 14:20

score 29 · Answer 6 · 2024-02-01T19:31:30.560000

29

Views

GGnested plot with customization on position for strip text

Published on 01 February 2024 at 19:31

score 99 · Answer 7 · 2024-01-18T04:24:34.597000

99

Views

phyloseq to csv, with selected rows and columns?

Published on 18 January 2024 at 04:24

score 56 · Answer 8 · 2023-12-22T11:46:17.377000

56

Views

ggnested relative abundance graph error differing number of rows

Published on 22 December 2023 at 11:46

score 76 · Answer 9 · 2023-11-22T10:46:33.883000

76

Views

Problem with plot_taxa_compiosition function in microbiomeutilites package

Published on 22 November 2023 at 10:46

score 43 · Answer 10 · 2023-09-26T18:29:43.843000

43

Views

How to resolve the issue of NAs in distance matrix of a phyloseq object?

Published on 26 September 2023 at 18:29

score 51 · Answer 11 · 2023-09-23T17:38:09.423000

51

Views

Which statistical test to use for microbiome analysis - PERMANOVA/PERMDISP/Something Else?

Published on 23 September 2023 at 17:38

score 57 · Answer 12 · 2023-07-21T22:36:03.007000

57

Views

Phyloseq - Rarecurve is dominated by a single taxa

Published on 21 July 2023 at 22:36

score 166 · Answer 13 · 2023-07-19T00:52:38.440000

166

Views

How to add and specify additional ranks to phyloseq taxonomy?

Published on 19 July 2023 at 00:52

score 88 · Answer 14 · 2023-07-15T10:01:58.737000

88

Views

How to merge OTUs that appear in 2/3 replicates?

Published on 15 July 2023 at 10:01

score 115 · Answer 15 · 2023-07-07T00:50:18.877000

115

Views

Canonical Correspondence analysis

Published on 07 July 2023 at 00:50

score 148 · Answer 16 · 2023-07-06T17:12:31.617000

148

Views

filter phyloseq to use in fantaxtic

Published on 06 July 2023 at 17:12

score 349 · Answer 17 · 2023-06-28T09:56:50.657000

349

Views

Filtering taxa from phyloseq object

Published on 28 June 2023 at 09:56

score 661 · Answer 18 · 2023-06-24T04:18:06.193000

661

Views

Rarefaction curve

Published on 24 June 2023 at 04:18

score 42 · Answer 19 · 2023-06-22T14:06:36.593000

42

Views

RStudio plot window won't finish loading and/or won't properly load my plot

Published on 22 June 2023 at 14:06

score 26 · Answer 20 · 2023-06-20T17:03:08.707000

26

Views

Using a for loop to perform multiple of the same command on a many phyloseq object variable

Published on 20 June 2023 at 17:03

List Question

Selecting top taxa in phyloseq without having multiple unidentified

how to prevent ggplot `geom_ridgeline_gradient` to mess up plot after specifying `group` aesthetics

Facet Taxa axis in Phyloseq heatmap

Phyloseq object, merge samples

How to add convex hulls to beta diversity graphs using phyloseq

GGnested plot with customization on position for strip text

phyloseq to csv, with selected rows and columns?

ggnested relative abundance graph error differing number of rows

Problem with plot_taxa_compiosition function in microbiomeutilites package

How to resolve the issue of NAs in distance matrix of a phyloseq object?

Which statistical test to use for microbiome analysis - PERMANOVA/PERMDISP/Something Else?

Phyloseq - Rarecurve is dominated by a single taxa

How to add and specify additional ranks to phyloseq taxonomy?

How to merge OTUs that appear in 2/3 replicates?

Canonical Correspondence analysis

filter phyloseq to use in fantaxtic

Filtering taxa from phyloseq object

Rarefaction curve

RStudio plot window won't finish loading and/or won't properly load my plot

Using a for loop to perform multiple of the same command on a many phyloseq object variable

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