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468
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r - phyloseq - ordination of taxa other than species (family, order, etc.)

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#r #phylogeny #phyloseq
508
Views

How to assign one specific color to a specific taxa in a phyloseq object after using colorRampPalette

Published on
#r #color-palette #phyloseq
48
Views

Problem with plot_taxa_compiosition function in microbiomeutilites package

Published on
#r #phyloseq
248
Views

After separating into columns, how do I sort my data so that it's in the right column?

Published on
#r #taxonomy #phyloseq
283
Views

phyloseq: Discrepancies in otu counts before and after using tax_glom

Published on
#r #phyloseq
513
Views

Stacked bar chart with OTUs identified to different taxonomic levels

Published on
#r #phyloseq
2k
Views

Transformation introduced infinite values in continuous y-axis

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#r #ggplot2 #plot #boxplot #phyloseq
1.4k
Views

How to assess the relative abundance of specific taxa in phyloseq?

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#r #subset #phyloseq
322
Views

Failure to install phylosmith - unable to load shared object, undefined symbol

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#r #linux #tbb #phyloseq
389
Views

qiime2R - qiime to phyloseq

Published on
#phyloseq
524
Views

How do I use the NULL Value as a variable call in R Shiny

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#r #shiny #null #phyloseq
2.3k
Views

Phyloseq sample_data() and sample_names() not working to incorporate samples into phyloseq object

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#r #sample #names #phyloseq
4.9k
Views

Remove attributes from dataframe

Published on
#r #phyloseq
1.5k
Views

Non standard evaluation does not work: Error in h(simpleError(msg, call))

Published on
#r #nse #phyloseq
67
Views

I can't get the coefficients of the taxa that contribute to the groups differences

Published on
#coefficients #phyloseq
644
Views

A problem with making phyloseq object - Found more than one class "phylo" in cache

Published on
#r #validation #error-handling #r-package #phyloseq
227
Views

Adonis result does not match the NMDS plot?

Published on
#vegan #phyloseq
207
Views

error while plotting beta diversity with ggplot from phyloseq object

Published on
#r #ggplot2 #vegan #phyloseq
314
Views

error while writing file after adonis analysis

Published on
#r #vegan #phyloseq
546
Views

Removing the original color outline in R when using a new pallette in a barplot

Published on
#r #phyloseq

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