Question

Elegantly handle samples with insufficient data in workflow?

score 233 · Answer 1 · 2016-12-20 19:57:28

233

Views

Elegantly handle samples with insufficient data in workflow?

Published on 20 December 2016 at 19:57

score 168 · Answer 2 · 2017-01-04 13:59:20

168

Views

Defining Functions for Geany "Filetype"

Published on 04 January 2017 at 13:59

score 771 · Answer 3 · 2017-01-04 14:07:23

771

Views

Using regex in snakemake wildcards

Published on 04 January 2017 at 14:07

score 493 · Answer 4 · 2017-08-28 09:01:37

493

Views

Storing the result of a shell command

Published on 28 August 2017 at 09:01

score 1.7k · Answer 5 · 2017-08-30 23:57:45

1.7k

Views

Use of argparse in Snakemake script

Published on 30 August 2017 at 23:57

score 50 · Answer 6 · 2017-08-31 22:54:29

50

Views

Any pathway analysis written in snakelike

Published on 31 August 2017 at 22:54

score 8.8k · Answer 7 · 2017-08-31 20:44:08

8.8k

Views

Can SnakeMake be forced to rerun rules when files are missing

Published on 31 August 2017 at 20:44

score 160 · Answer 8 · 2017-09-05 22:00:59

160

Views

Can the output file object be passed to an input function in SnakeMake?

Published on 05 September 2017 at 22:00

score 783 · Answer 9 · 2017-09-06 03:57:42

783

Views

Accepting slightly different inputs to snakemake rule (.fq vs .fq.gz)

Published on 06 September 2017 at 03:57

score 1.9k · Answer 10 · 2017-09-06 10:13:12

1.9k

Views

Snakemake touch command

Published on 06 September 2017 at 10:13

score 124 · Answer 11 · 2017-09-11 14:11:51

124

Views

Proxy file on snakemake code

Published on 11 September 2017 at 14:11

score 154 · Answer 12 · 2017-09-08 16:32:18

154

Views

Many inputs to one output, access wildcards in input files

Published on 08 September 2017 at 16:32

score 569 · Answer 13 · 2017-09-13 13:06:54

569

Views

How to translate a simple target pattern rule to snakemake?

Published on 13 September 2017 at 13:06

score 969 · Answer 14 · 2017-09-13 10:00:48

969

Views

Multiple "params" in Snakemake file

Published on 13 September 2017 at 10:00

score 224 · Answer 15 · 2017-09-19 12:53:45

224

Views

Snakemake: rule generate strange results

Published on 19 September 2017 at 12:53

score 2.1k · Answer 16 · 2020-09-28 12:09:33

2.1k

Views

snakemake: How to log python scripts executed by script directive?

Published on 28 September 2020 at 12:09

score 99 · Answer 17 · 2020-09-28 10:25:39

99

Views

Snakemake on cluster: OutputException and submit one job for each wildcard item

Published on 28 September 2020 at 10:25

score 56 · Answer 18 · 2020-09-28 10:37:47

56

Views

snakemake covering old output file

Published on 28 September 2020 at 10:37

score 516 · Answer 19 · 2020-09-30 23:09:46

516

Views

Snakemake perform rules based on configs

Published on 30 September 2020 at 23:09

score 348 · Answer 20 · 2020-09-30 19:52:40

348

Views

How to parallelize a rule by input in Snakefile (with multiple outputs)

Published on 30 September 2020 at 19:52

List Question

Elegantly handle samples with insufficient data in workflow?

Defining Functions for Geany "Filetype"

Using regex in snakemake wildcards

Storing the result of a shell command

Use of argparse in Snakemake script

Any pathway analysis written in snakelike

Can SnakeMake be forced to rerun rules when files are missing

Can the output file object be passed to an input function in SnakeMake?

Accepting slightly different inputs to snakemake rule (.fq vs .fq.gz)

Snakemake touch command

Proxy file on snakemake code

Many inputs to one output, access wildcards in input files

How to translate a simple target pattern rule to snakemake?

Multiple "params" in Snakemake file

Snakemake: rule generate strange results

snakemake: How to log python scripts executed by script directive?

Snakemake on cluster: OutputException and submit one job for each wildcard item

snakemake covering old output file

Snakemake perform rules based on configs

How to parallelize a rule by input in Snakefile (with multiple outputs)

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