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20
278
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Elegantly handle samples with insufficient data in workflow?

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#snakemake
222
Views

Defining Functions for Geany "Filetype"

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#geany #snakemake
821
Views

Using regex in snakemake wildcards

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#snakemake
539
Views

Storing the result of a shell command

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#python #shell #snakemake
1.8k
Views

Use of argparse in Snakemake script

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#python #python-3.x #command-line-arguments #argparse #snakemake
95
Views

Any pathway analysis written in snakelike

Published on
#bioinformatics #snakemake
8.9k
Views

Can SnakeMake be forced to rerun rules when files are missing

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#delete-file #snakemake
202
Views

Can the output file object be passed to an input function in SnakeMake?

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#input #output #filenames #snakemake
835
Views

Accepting slightly different inputs to snakemake rule (.fq vs .fq.gz)

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#bioinformatics #snakemake
1.9k
Views

Snakemake touch command

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#snakemake
135
Views

Proxy file on snakemake code

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#snakemake
166
Views

Many inputs to one output, access wildcards in input files

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#snakemake
579
Views

How to translate a simple target pattern rule to snakemake?

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#snakemake
982
Views

Multiple "params" in Snakemake file

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#snakemake
234
Views

Snakemake: rule generate strange results

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#snakemake
2.1k
Views

snakemake: How to log python scripts executed by script directive?

Published on
#snakemake
112
Views

Snakemake on cluster: OutputException and submit one job for each wildcard item

Published on
#python #snakemake #lsf
68
Views

snakemake covering old output file

Published on
#conda #pipeline #snakemake
527
Views

Snakemake perform rules based on configs

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#snakemake
362
Views

How to parallelize a rule by input in Snakefile (with multiple outputs)

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#snakemake

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