Question

Elegantly handle samples with insufficient data in workflow?

score 300 · Answer 1 · 2024-12-29 15:18:49

300

Views

Elegantly handle samples with insufficient data in workflow?

Published on 29 December 2024 at 15:18

score 242 · Answer 2 · 2024-12-05 10:58:53

242

Views

Defining Functions for Geany "Filetype"

Published on 05 December 2024 at 10:58

score 837 · Answer 3 · 2024-12-29 14:55:46

837

Views

Using regex in snakemake wildcards

Published on 29 December 2024 at 14:55

score 557 · Answer 4 · 2024-12-29 14:55:45

557

Views

Storing the result of a shell command

Published on 29 December 2024 at 14:55

score 1.8k · Answer 5 · 2024-12-29 14:58:19

1.8k

Views

Use of argparse in Snakemake script

Published on 29 December 2024 at 14:58

score 116 · Answer 6 · 2024-12-29 15:01:38

116

Views

Any pathway analysis written in snakelike

Published on 29 December 2024 at 15:01

score 8.9k · Answer 7 · 2024-12-29 15:24:20

8.9k

Views

Can SnakeMake be forced to rerun rules when files are missing

Published on 29 December 2024 at 15:24

score 218 · Answer 8 · 2024-12-29 15:27:45

218

Views

Can the output file object be passed to an input function in SnakeMake?

Published on 29 December 2024 at 15:27

score 855 · Answer 9 · 2024-12-29 15:24:19

855

Views

Accepting slightly different inputs to snakemake rule (.fq vs .fq.gz)

Published on 29 December 2024 at 15:24

score 2k · Answer 10 · 2024-12-29 14:48:44

2k

Views

Snakemake touch command

Published on 29 December 2024 at 14:48

score 141 · Answer 11 · 2025-01-02 16:19:59

141

Views

Proxy file on snakemake code

Published on 02 January 2025 at 16:19

score 172 · Answer 12 · 2024-12-29 15:16:55

172

Views

Many inputs to one output, access wildcards in input files

Published on 29 December 2024 at 15:16

score 586 · Answer 13 · 2024-12-29 15:18:48

586

Views

How to translate a simple target pattern rule to snakemake?

Published on 29 December 2024 at 15:18

score 987 · Answer 14 · 2024-12-29 14:53:14

987

Views

Multiple "params" in Snakemake file

Published on 29 December 2024 at 14:53

score 242 · Answer 15 · 2024-12-29 14:58:18

242

Views

Snakemake: rule generate strange results

Published on 29 December 2024 at 14:58

score 2.2k · Answer 16 · 2024-12-29 15:24:18

2.2k

Views

snakemake: How to log python scripts executed by script directive?

Published on 29 December 2024 at 15:24

score 116 · Answer 17 · 2024-12-29 15:31:55

116

Views

Snakemake on cluster: OutputException and submit one job for each wildcard item

Published on 29 December 2024 at 15:31

score 73 · Answer 18 · 2024-12-29 14:55:44

73

Views

snakemake covering old output file

Published on 29 December 2024 at 14:55

score 532 · Answer 19 · 2024-12-29 14:58:17

532

Views

Snakemake perform rules based on configs

Published on 29 December 2024 at 14:58

score 368 · Answer 20 · 2024-12-29 15:27:44

368

Views

How to parallelize a rule by input in Snakefile (with multiple outputs)

Published on 29 December 2024 at 15:27

List Question

Elegantly handle samples with insufficient data in workflow?

Defining Functions for Geany "Filetype"

Using regex in snakemake wildcards

Storing the result of a shell command

Use of argparse in Snakemake script

Any pathway analysis written in snakelike

Can SnakeMake be forced to rerun rules when files are missing

Can the output file object be passed to an input function in SnakeMake?

Accepting slightly different inputs to snakemake rule (.fq vs .fq.gz)

Snakemake touch command

Proxy file on snakemake code

Many inputs to one output, access wildcards in input files

How to translate a simple target pattern rule to snakemake?

Multiple "params" in Snakemake file

Snakemake: rule generate strange results

snakemake: How to log python scripts executed by script directive?

Snakemake on cluster: OutputException and submit one job for each wildcard item

snakemake covering old output file

Snakemake perform rules based on configs

How to parallelize a rule by input in Snakefile (with multiple outputs)

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