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how to use bedtools extracts dna sequence position and length

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#sequence #bed #bedtools
1.6k
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is there an R function similar to bedtools intersect?

Published on
#r #intersection #bedtools
345
Views

Use a variable instead of a file for bedtools getfasta BED input?

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#bash #variables #bedtools
1.1k
Views

Problems with bedtools installation

Published on
#bash #installation #bedtools
801
Views

How to generate a custom bed file to use for bedtools intersect?

Published on
#bioinformatics #intersection #genome #sequencing #bedtools
113
Views

bash loop file in one folder against all files in another folder

Published on
#for-loop #unix #intersect #bedtools
401
Views

Find rows with overlapping ranges

Published on
#r #dplyr #tidyr #bedtools
427
Views

bedtools intersect, error reading files read from a directory

Published on
#bash #bedtools
60
Views

bedtools shuffle -excl doesn't seem to warn about consistent naming convention

Published on
#shuffle #bedtools
276
Views

pybedtools bam_to_bed() bedpe

Published on
#python #bedtools
124
Views

Using pybedtools with a BEDTools static binary

Published on
#python #bedtools
400
Views

RStudio Server from Windows Subsystem for Linux cannot find packages on PATH

Published on
#r #path #windows-subsystem-for-linux #rstudio-server #bedtools
215
Views

Installing Deeptools in R

Published on
#r #bedtools
225
Views

ISSUE: malformed BED entry at line 2. Start was greater than end. Exiting. bedtools

Published on
#ubuntu #awk #command-line #bioinformatics #bedtools
274
Views

Parse out gene name after bed and vcf intersect

Published on
#r #bioinformatics #bedtools
353
Views

using perl array as input to bash bedtools command

Published on
#arrays #bash #perl #bedtools
43
Views

Identifying homologous regions across genomes

Published on
#bash #bedtools
177
Views

Different results with MACS2 when Peakcalling with .bed or .bam

Published on
#bioinformatics #bam #bed #bedtools
475
Views

converting multiple BAM files to BED files

Published on
#shell #bioinformatics #bam #bedtools
177
Views

Filter overlapping entries in bed file (2)

Published on
#bash #shell #bioinformatics #bed #bedtools

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