Question

how to use bedtools extracts dna sequence position and length

score 22 · Answer 1 · 2023-10-27 03:22:46

22

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how to use bedtools extracts dna sequence position and length

Published on 27 October 2023 at 03:22

score 1.6k · Answer 2 · 2020-11-27 19:19:22

1.6k

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is there an R function similar to bedtools intersect?

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score 331 · Answer 3 · 2020-12-17 15:58:19

331

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score 1.1k · Answer 4 · 2022-03-05 15:59:07

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score 787 · Answer 5 · 2022-05-25 17:44:21

787

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How to generate a custom bed file to use for bedtools intersect?

Published on 25 May 2022 at 17:44

score 98 · Answer 6 · 2022-11-22 22:11:38

98

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bash loop file in one folder against all files in another folder

Published on 22 November 2022 at 22:11

score 386 · Answer 7 · 2022-12-04 08:53:59

386

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score 412 · Answer 8 · 2017-05-18 13:50:22

412

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score 43 · Answer 9 · 2021-09-15 08:51:25

43

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Published on 15 September 2021 at 08:51

score 259 · Answer 10 · 2021-06-22 11:22:15

259

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score 119 · Answer 11 · 2022-01-13 00:03:41

119

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score 393 · Answer 12 · 2022-08-11 06:50:22

393

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score 207 · Answer 13 · 2023-05-10 18:03:37

207

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score 219 · Answer 14 · 2023-06-07 01:05:52

219

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score 268 · Answer 15 · 2022-02-01 15:38:18

268

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score 347 · Answer 16 · 2014-09-27 19:10:03

347

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score 37 · Answer 17 · 2024-02-05 10:33:51

37

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score 170 · Answer 18 · 2015-11-10 16:45:46

170

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Different results with MACS2 when Peakcalling with .bed or .bam

Published on 10 November 2015 at 16:45

score 469 · Answer 19 · 2020-11-16 14:58:08

469

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Published on 16 November 2020 at 14:58

score 172 · Answer 20 · 2017-06-02 14:36:05

172

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List Question

how to use bedtools extracts dna sequence position and length

is there an R function similar to bedtools intersect?

Use a variable instead of a file for bedtools getfasta BED input?

Problems with bedtools installation

How to generate a custom bed file to use for bedtools intersect?

bash loop file in one folder against all files in another folder

Find rows with overlapping ranges

bedtools intersect, error reading files read from a directory

bedtools shuffle -excl doesn't seem to warn about consistent naming convention

pybedtools bam_to_bed() bedpe

Using pybedtools with a BEDTools static binary

RStudio Server from Windows Subsystem for Linux cannot find packages on PATH

Installing Deeptools in R

ISSUE: malformed BED entry at line 2. Start was greater than end. Exiting. bedtools

Parse out gene name after bed and vcf intersect

using perl array as input to bash bedtools command

Identifying homologous regions across genomes

Different results with MACS2 when Peakcalling with .bed or .bam

converting multiple BAM files to BED files

Filter overlapping entries in bed file (2)

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