Question

Command lines in snakemake

score 62 · Answer 1 · 2020-10-20 08:27:25

62

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Command lines in snakemake

Published on 20 October 2020 at 08:27

score 770 · Answer 2 · 2020-10-20 14:44:13

770

Views

Running multiple snakemake rules

Published on 20 October 2020 at 14:44

score 1k · Answer 3 · 2012-01-15 12:37:13

1k

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Bio::DB::Sam - Get number of mappings for all reads in bam file

Published on 15 January 2012 at 12:37

score 222 · Answer 4 · 2023-11-16 16:20:26

222

Views

Extract Reads by region from a BAM file

Published on 16 November 2023 at 16:20

score 63 · Answer 5 · 2023-12-22 18:10:43

63

Views

How do i get and use AlignmentHeader from pysam?

Published on 22 December 2023 at 18:10

score 138 · Answer 6 · 2020-12-14 21:40:56

138

Views

Looking up and extracting a line from a big file matching the lines of another big file

Published on 14 December 2020 at 21:40

score 1k · Answer 7 · 2022-04-19 14:41:29

1k

Views

Different estimates between bam and gam model (mgcv) and interaction term estimates edf of 0

Published on 19 April 2022 at 14:41

score 601 · Answer 8 · 2022-04-27 14:35:44

601

Views

How to retain reads on only an certain size in a bam file?

Published on 27 April 2022 at 14:35

score 515 · Answer 9 · 2022-05-07 09:06:56

515

Views

convert CRAM file to SAM file

Published on 07 May 2022 at 09:06

score 440 · Answer 10 · 2018-11-06 14:09:35

440

Views

Running DeepVariant on GRCh38 Whole Exome Sequence

Published on 06 November 2018 at 14:09

score 974 · Answer 11 · 2021-06-05 11:39:14

974

Views

How to use pysam.view() to convert SAM to BAM

Published on 05 June 2021 at 11:39

score 182 · Answer 12 · 2023-01-03 14:20:14

182

Views

MissingOutputException snakemake

Published on 03 January 2023 at 14:20

score 1.9k · Answer 13 · 2022-05-31 08:16:15

1.9k

Views

Bash: Extract reads from BAM files based on read length

Published on 31 May 2022 at 08:16

score 141 · Answer 14 · 2022-06-14 08:01:59

141

Views

Find sequencing reads with insertions longer than number

Published on 14 June 2022 at 08:01

score 641 · Answer 15 · 2022-11-26 15:38:56

641

Views

sum elements in python list if match condition

Published on 26 November 2022 at 15:38

score 103 · Answer 16 · 2022-12-05 15:55:56

103

Views

CRISPR genome wide screen analysis using MAGeCK-- Loss of reads/sgRNA using MAGeCK count function?

Published on 05 December 2022 at 15:55

score 183 · Answer 17 · 2022-12-06 07:42:39

183

Views

pilon error, file .bam must be indexed BAM

Published on 06 December 2022 at 07:42

score 6.2k · Answer 18 · 2014-08-05 07:28:23

6.2k

Views

Create VCF from .bim, .bed and .fam files

Published on 05 August 2014 at 07:28

score 86 · Answer 19 · 2017-08-03 02:20:25

86

Views

How to write rules for software with version specific shell calls? (E.g. Samtools 1.3.1 and 0.1.18)

Published on 03 August 2017 at 02:20

score 113 · Answer 20 · 2021-09-17 18:28:59

113

Views

Bam file processing function code with parseargs in Python and Ubuntu

Published on 17 September 2021 at 18:28

List Question

Command lines in snakemake

Running multiple snakemake rules

Bio::DB::Sam - Get number of mappings for all reads in bam file

Extract Reads by region from a BAM file

How do i get and use AlignmentHeader from pysam?

Looking up and extracting a line from a big file matching the lines of another big file

Different estimates between bam and gam model (mgcv) and interaction term estimates edf of 0

How to retain reads on only an certain size in a bam file?

convert CRAM file to SAM file

Running DeepVariant on GRCh38 Whole Exome Sequence

How to use pysam.view() to convert SAM to BAM

MissingOutputException snakemake

Bash: Extract reads from BAM files based on read length

Find sequencing reads with insertions longer than number

sum elements in python list if match condition

CRISPR genome wide screen analysis using MAGeCK-- Loss of reads/sgRNA using MAGeCK count function?

pilon error, file .bam must be indexed BAM

Create VCF from .bim, .bed and .fam files

How to write rules for software with version specific shell calls? (E.g. Samtools 1.3.1 and 0.1.18)

Bam file processing function code with parseargs in Python and Ubuntu

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