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20
105
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Command lines in snakemake

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#ls #snakemake #bam
816
Views

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1k
Views

Bio::DB::Sam - Get number of mappings for all reads in bam file

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#perl #hash #mapping #bioinformatics #bam
263
Views

Extract Reads by region from a BAM file

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#alignment #bam
101
Views

How do i get and use AlignmentHeader from pysam?

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#bam #pysam
183
Views

Looking up and extracting a line from a big file matching the lines of another big file

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#bash #algorithm #awk #sed #bam
1k
Views

Different estimates between bam and gam model (mgcv) and interaction term estimates edf of 0

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#r #gam #mgcv #bam
645
Views

How to retain reads on only an certain size in a bam file?

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#bioinformatics #samtools #bam
566
Views

convert CRAM file to SAM file

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#bioinformatics #genome #sam #scramble #bam
487
Views

Running DeepVariant on GRCh38 Whole Exome Sequence

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#google-cloud-platform #bioinformatics #vcf-variant-call-format #google-genomics #bam
1k
Views

How to use pysam.view() to convert SAM to BAM

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#python #sam #samtools #pysam #bam
197
Views

MissingOutputException snakemake

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#snakemake #samtools #bam
2k
Views

Bash: Extract reads from BAM files based on read length

Published on
#bash #extract #bam
155
Views

Find sequencing reads with insertions longer than number

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#sequencing #samtools #bam
653
Views

sum elements in python list if match condition

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#python #bam #pysam
118
Views

CRISPR genome wide screen analysis using MAGeCK-- Loss of reads/sgRNA using MAGeCK count function?

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#python #bioinformatics #fastq #bam
197
Views

pilon error, file .bam must be indexed BAM

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#bioinformatics #bam
6.2k
Views

Create VCF from .bim, .bed and .fam files

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#bioinformatics #genetics #bam #vcf-variant-call-format #bed
98
Views

How to write rules for software with version specific shell calls? (E.g. Samtools 1.3.1 and 0.1.18)

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#bioinformatics #snakemake #samtools #bam
127
Views

Bam file processing function code with parseargs in Python and Ubuntu

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#python #pandas #argparse #pysam #bam

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