Question

How do I filter empty lines (valid rs-number but no statistical data,) out of my GWAS sumstats?

score 14 · Answer 1 · 2023-10-16 14:35:24

14

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How do I filter empty lines (valid rs-number but no statistical data,) out of my GWAS sumstats?

Published on 16 October 2023 at 14:35

score 21 · Answer 2 · 2023-11-28 08:01:37

21

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GWAS using GAPIT3, get one error:"gapit Error in merge.data.frame......negative length vectors are not allowed"

Published on 28 November 2023 at 08:01

score 45 · Answer 3 · 2023-12-14 12:13:02

45

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extracting instruments for mendelian randomization analysis

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score 46 · Answer 4 · 2022-04-16 12:14:05

46

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score 257 · Answer 5 · 2022-04-18 05:11:44

257

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score 61 · Answer 6 · 2022-04-20 09:38:30

61

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score 162 · Answer 7 · 2022-04-26 06:28:14

162

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score 330 · Answer 8 · 2022-04-29 07:33:02

330

Views

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score 715 · Answer 9 · 2022-05-06 21:58:44

715

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score 63 · Answer 10 · 2022-12-15 09:34:16

63

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score 66 · Answer 11 · 2022-12-12 10:47:52

66

Views

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Published on 12 December 2022 at 10:47

score 345 · Answer 12 · 2022-03-06 21:33:46

ERROR: LoadError: MethodError: no method matching filter(::typeof(isfinite), ::Base.SkipMissing{Array{Union{Missing, Float64},1}})

score 342 · Answer 13 · 2022-03-16 11:44:02

342

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Unable to find the internal logging class: java.lang.NoClassDefFoundError: org/apache/spark/internal/Logging$class

Published on 16 March 2022 at 11:44

score 453 · Answer 14 · 2021-02-12 19:51:24

453

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score 268 · Answer 15 · 2022-06-06 13:36:33

268

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score 46 · Answer 16 · 2022-06-13 07:38:51

46

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score 63 · Answer 17 · 2022-11-18 18:48:43

63

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Published on 18 November 2022 at 18:48

score 364 · Answer 18 · 2022-12-07 20:31:02

364

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score 418 · Answer 19 · 2022-12-10 23:05:57

418

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Published on 10 December 2022 at 23:05

score 287 · Answer 20 · 2021-10-13 11:32:18

287

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List Question

How do I filter empty lines (valid rs-number but no statistical data,) out of my GWAS sumstats?

GWAS using GAPIT3, get one error:"gapit Error in merge.data.frame......negative length vectors are not allowed"

extracting instruments for mendelian randomization analysis

Error in creating a dummy variable for plink GWAS?

How to Extract list of all SNPs from bed file using Python

Executing Concatenation for all rows

Pivotting the SNP Table , Converting CSV file to JSON using Bash

How to replace 00 with Na excluding first row & first column using bash in comma separated file

Interactive Manhattan plot with string chromosome names

loop a variable outside the file

model not converged when fitting SAIGE null model

ERROR: LoadError: MethodError: no method matching filter(::typeof(isfinite), ::Base.SkipMissing{Array{Union{Missing, Float64},1}})

Unable to find the internal logging class: java.lang.NoClassDefFoundError: org/apache/spark/internal/Logging$class

Manhattan plot not labelling all data points

Custom manhattan plot multi x-axis

How to generate random float numbers for each SNP using Python

R - How to run a GWAS analysis with no position data?

Identify SNP from genetic position

GenABEL on R4.2.2 Windows

Design matrix for genotypes in R

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