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List Question
20
Devhide
2024-12-30 13:20:44
1k
Views
How to modify the attributes of a class in python using a method without returning the instance (inplace operation)
Published on
30 December 2024 at 13:20
#python
#numpy
#inheritance
#scanpy
274
Views
Error in sparseMatrix(i = x[["indices"]][] + 1, p = x[["indptr"]][], x = x[["data"]][], : 'dims' must contain all (i,j) pairs
Published on
27 December 2024 at 02:10
#r
#seurat
#scanpy
14.9k
Views
How do I create AnnData object from a pandas data frame count matrix?
Published on
08 January 2025 at 00:23
#python
#pandas
#scanpy
9.4k
Views
subsetting anndata on basis of louvain clusters
Published on
30 December 2024 at 13:04
#python
#rna-seq
#scanpy
4.1k
Views
How to change font size in scanpy
Published on
30 December 2024 at 12:57
#python
#python-3.x
#matplotlib
#scanpy
468
Views
How to change Y Axis label size in matplotlib
Published on
30 December 2024 at 13:03
#python
#python-3.x
#matplotlib
#plot
#scanpy
1k
Views
I have installed ScanPy and AnnData in my linux environment, but I get the following ImportError: cannot import name 'PathLike' from 'anndata.compat'
Published on
08 January 2025 at 00:24
#python
#import
#h5py
#scanpy
788
Views
Library not loaded: @rpath/libhdf5.103.dylib when importing scanpy and tables
Published on
07 January 2025 at 23:55
#python
#pytables
#scanpy
857
Views
I'm trying to subset from multiple obs in scanpy
Published on
08 January 2025 at 00:24
#python
#subset
#bioinformatics
#scanpy
1.1k
Views
Trying to concat a list of 12 AnnData objects but am getting duplicates
Published on
30 December 2024 at 13:15
#python
#scanpy
620
Views
Adjust the cluster order of sc.pl.heatmap in scanpy
Published on
30 December 2024 at 13:06
#heatmap
#scanpy
58
Views
How can this for loop code work? (pandas, jupyter, python)
Published on
08 January 2025 at 00:23
#pandas
#dataframe
#dictionary
#for-loop
#scanpy
2.4k
Views
scanpy correlation matrix with dendrogram
Published on
30 December 2024 at 13:00
#python
#matrix
#pearson-correlation
#scanpy
174
Views
scv.pl.proportions(): numpy.AxisError in `Cellrank` workflow
Published on
30 December 2024 at 13:08
#seurat
#scanpy
453
Views
Having trouble in installing scanpy in python
Published on
30 December 2024 at 13:03
#python
#failed-installation
#scanpy
1.6k
Views
Scanpy Matplotlib ax objects?
Published on
02 January 2025 at 01:21
#python
#matplotlib
#scanpy
1.6k
Views
Exporting a list of genes to .csv after carrying out sc.tl.rank_genes_groups in scanpy
Published on
08 January 2025 at 00:18
#python
#output
#scanpy
1k
Views
scanpy neighbors function: LLVM ERROR: Symbol not found: __svml_sqrtf8
Published on
30 December 2024 at 13:13
#python
#llvm
#numba
#scanpy
6.9k
Views
How to resolve: "ContextualVersionConflict" on Python?
Published on
30 December 2024 at 13:06
#python
#pip
#numba
#llvmlite
#scanpy
446
Views
How to add a color bar to label the cells from which sample with `annadata.obs['samples']` in the `scanpy.pl.heatmap` plot?
Published on
30 December 2024 at 13:21
#python
#bioinformatics
#scanpy
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