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20
Devhide
2024-02-13T10:48:33.617000
52
Views
KeyError when using sc.pl.spatial in Scanpy: 'images' not found in spatial data
Published on
13 February 2024 at 10:48
#python
#data-analysis
#spatial
#scanpy
301
Views
Error in sparseMatrix(i = x[["indices"]][] + 1, p = x[["indptr"]][], x = x[["data"]][], : 'dims' must contain all (i,j) pairs
Published on
24 October 2023 at 03:00
#r
#seurat
#scanpy
160
Views
Scanpy - single-cell RNA sequencing - pre-processing of individual Vs. integrated dataset
Published on
27 September 2023 at 08:47
#python
#bioinformatics
#data-preprocessing
#scanpy
173
Views
Issue using infercnvpy.io.genomic_position_from_gtf
Published on
22 September 2023 at 21:40
#python
#rna-seq
#scanpy
480
Views
How to plot proportion of cells in each cluster with scanpy?
Published on
22 September 2023 at 19:03
#python
#scanpy
440
Views
change color clusters umap python
Published on
19 September 2023 at 11:08
#python
#scanpy
90
Views
ValueError: setting an array element with a sequence- Anndata object
Published on
19 July 2023 at 16:12
#typeerror
#valueerror
#scanpy
144
Views
Python 3.11 decorator to convert a function into a dataclass for scikit-learn BaseEstimator TransformerMixin including type annotations
Published on
03 July 2023 at 17:29
#python
#python-3.x
#scikit-learn
#python-decorators
#scanpy
566
Views
How to find which clusters a particular gene is expressed in using scanpy for scRNA-seq?
Published on
20 June 2023 at 12:39
#python
#pandas
#dataframe
#bioinformatics
#scanpy
129
Views
Jupyter Notebook scanpy import fails
Published on
17 June 2023 at 09:17
#python
#scanpy
51
Views
How to get user defined input for defining threshold in python script
Published on
16 May 2023 at 09:52
#python
#scanpy
221
Views
ValueError with file extension
Published on
02 May 2023 at 05:42
#python
#bioinformatics
#valueerror
#scanpy
281
Views
How to save plot to google drive?
Published on
28 April 2023 at 19:06
#python
#matplotlib
#google-colaboratory
#scanpy
126
Views
How to split the single cell CITESeq data based on Hashtag antibody?
Published on
13 April 2023 at 21:12
#rna-seq
#seurat
#scanpy
115
Views
how to plot scanpy tsne based on different conditions
Published on
12 April 2023 at 08:33
#python
#scanpy
#tsne
225
Views
grid arrange tsne plots from a for loop in scanpy using matplotlib
Published on
04 April 2023 at 12:16
#python
#grid
#visualization
#scanpy
#tsne
416
Views
how can i add numeric scales to x and y axis of scanpy umap?
Published on
03 April 2023 at 12:57
#python
#matplotlib
#visualization
#scanpy
89
Views
Please tell me how to fill an empty matrix with elements using for loop
Published on
14 March 2023 at 18:32
#python
#pandas
#dataframe
#similarity
#scanpy
1.7k
Views
getting "ValueError: Axis limits cannot be NaN or Inf" error when plotting PCs
Published on
03 March 2023 at 12:02
#plot
#pca
#scanpy
72
Views
making cache using cache=True does not work in Scanpy
Published on
23 February 2023 at 08:17
#caching
#oserror
#scanpy
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