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20
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How to modify the attributes of a class in python using a method without returning the instance (inplace operation)

Published on
#python #numpy #inheritance #scanpy
283
Views

Error in sparseMatrix(i = x[["indices"]][] + 1, p = x[["indptr"]][], x = x[["data"]][], : 'dims' must contain all (i,j) pairs

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#r #seurat #scanpy
14.9k
Views

How do I create AnnData object from a pandas data frame count matrix?

Published on
#python #pandas #scanpy
9.4k
Views

subsetting anndata on basis of louvain clusters

Published on
#python #rna-seq #scanpy
4.1k
Views

How to change font size in scanpy

Published on
#python #python-3.x #matplotlib #scanpy
475
Views

How to change Y Axis label size in matplotlib

Published on
#python #python-3.x #matplotlib #plot #scanpy
1k
Views

I have installed ScanPy and AnnData in my linux environment, but I get the following ImportError: cannot import name 'PathLike' from 'anndata.compat'

Published on
#python #import #h5py #scanpy
796
Views

Library not loaded: @rpath/libhdf5.103.dylib when importing scanpy and tables

Published on
#python #pytables #scanpy
863
Views

I'm trying to subset from multiple obs in scanpy

Published on
#python #subset #bioinformatics #scanpy
1.1k
Views

Trying to concat a list of 12 AnnData objects but am getting duplicates

Published on
#python #scanpy
625
Views

Adjust the cluster order of sc.pl.heatmap in scanpy

Published on
#heatmap #scanpy
64
Views

How can this for loop code work? (pandas, jupyter, python)

Published on
#pandas #dataframe #dictionary #for-loop #scanpy
2.4k
Views

scanpy correlation matrix with dendrogram

Published on
#python #matrix #pearson-correlation #scanpy
182
Views

scv.pl.proportions(): numpy.AxisError in `Cellrank` workflow

Published on
#seurat #scanpy
458
Views

Having trouble in installing scanpy in python

Published on
#python #failed-installation #scanpy
1.6k
Views

Scanpy Matplotlib ax objects?

Published on
#python #matplotlib #scanpy
1.7k
Views

Exporting a list of genes to .csv after carrying out sc.tl.rank_genes_groups in scanpy

Published on
#python #output #scanpy
1k
Views

scanpy neighbors function: LLVM ERROR: Symbol not found: __svml_sqrtf8

Published on
#python #llvm #numba #scanpy
6.9k
Views

How to resolve: "ContextualVersionConflict" on Python?

Published on
#python #pip #numba #llvmlite #scanpy
452
Views

How to add a color bar to label the cells from which sample with `annadata.obs['samples']` in the `scanpy.pl.heatmap` plot?

Published on
#python #bioinformatics #scanpy

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