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List Question
20
Devhide
2020-10-14 19:07:34
1k
Views
How to modify the attributes of a class in python using a method without returning the instance (inplace operation)
Published on
14 October 2020 at 19:07
#python
#numpy
#inheritance
#scanpy
238
Views
Error in sparseMatrix(i = x[["indices"]][] + 1, p = x[["indptr"]][], x = x[["data"]][], : 'dims' must contain all (i,j) pairs
Published on
24 October 2023 at 03:00
#r
#seurat
#scanpy
14.8k
Views
How do I create AnnData object from a pandas data frame count matrix?
Published on
03 December 2020 at 00:01
#python
#pandas
#scanpy
9.3k
Views
subsetting anndata on basis of louvain clusters
Published on
16 September 2020 at 08:31
#python
#rna-seq
#scanpy
4.1k
Views
How to change font size in scanpy
Published on
16 September 2020 at 17:36
#python
#python-3.x
#matplotlib
#scanpy
436
Views
How to change Y Axis label size in matplotlib
Published on
18 September 2020 at 02:53
#python
#python-3.x
#matplotlib
#plot
#scanpy
1k
Views
I have installed ScanPy and AnnData in my linux environment, but I get the following ImportError: cannot import name 'PathLike' from 'anndata.compat'
Published on
03 June 2021 at 10:00
#python
#import
#h5py
#scanpy
760
Views
Library not loaded: @rpath/libhdf5.103.dylib when importing scanpy and tables
Published on
11 June 2021 at 17:58
#python
#pytables
#scanpy
819
Views
I'm trying to subset from multiple obs in scanpy
Published on
14 December 2022 at 07:37
#python
#subset
#bioinformatics
#scanpy
1k
Views
Trying to concat a list of 12 AnnData objects but am getting duplicates
Published on
22 December 2022 at 19:42
#python
#scanpy
613
Views
Adjust the cluster order of sc.pl.heatmap in scanpy
Published on
03 January 2023 at 08:15
#heatmap
#scanpy
49
Views
How can this for loop code work? (pandas, jupyter, python)
Published on
14 January 2023 at 04:29
#pandas
#dataframe
#dictionary
#for-loop
#scanpy
2.4k
Views
scanpy correlation matrix with dendrogram
Published on
06 March 2022 at 15:12
#python
#matrix
#pearson-correlation
#scanpy
168
Views
scv.pl.proportions(): numpy.AxisError in `Cellrank` workflow
Published on
28 March 2022 at 06:09
#seurat
#scanpy
443
Views
Having trouble in installing scanpy in python
Published on
15 November 2022 at 09:48
#python
#failed-installation
#scanpy
1.6k
Views
Scanpy Matplotlib ax objects?
Published on
17 September 2021 at 15:05
#python
#matplotlib
#scanpy
1.6k
Views
Exporting a list of genes to .csv after carrying out sc.tl.rank_genes_groups in scanpy
Published on
26 August 2021 at 05:21
#python
#output
#scanpy
999
Views
scanpy neighbors function: LLVM ERROR: Symbol not found: __svml_sqrtf8
Published on
02 September 2021 at 07:39
#python
#llvm
#numba
#scanpy
6.9k
Views
How to resolve: "ContextualVersionConflict" on Python?
Published on
01 September 2021 at 13:12
#python
#pip
#numba
#llvmlite
#scanpy
440
Views
How to add a color bar to label the cells from which sample with `annadata.obs['samples']` in the `scanpy.pl.heatmap` plot?
Published on
08 July 2021 at 15:57
#python
#bioinformatics
#scanpy
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