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20
Devhide
2024-12-31 11:46:12
90
Views
DESCEND's function 'selectGenes' takes forever to finish on sparse matrix, and also shows no error message
Published on
31 December 2024 at 11:46
#r
#cluster-analysis
#sparse-matrix
#rna-seq
65
Views
Complication with clustree image generation
Published on
31 December 2024 at 11:40
#r
#bioinformatics
#resolution
#hierarchical-clustering
#rna-seq
138
Views
Nextflow script to check adapter content and run trimmomatic
Published on
31 December 2024 at 17:19
#bash
#nextflow
#rna-seq
87
Views
WDL run through input text file and sub into command
Published on
31 December 2024 at 11:41
#bash
#rna-seq
#wdl
139
Views
Error in MouseRNAseqData() ( scRNA seq analysis)
Published on
31 December 2024 at 11:40
#rna-seq
259
Views
Issue with CellCycleScoring in Seurat Saying 'Rowmeans' subscript is out of bounds
Published on
31 December 2024 at 11:45
#r
#cell
#seurat
#rna-seq
67
Views
"no such file or directory" - but lists a file location that has not been specified
Published on
04 January 2025 at 20:40
#r
#rstudio
#rna-seq
#sequencing
#nomachine
181
Views
Limma/DESeq2 for unbalanced nested design (paired samples)
Published on
31 December 2024 at 11:42
#r
#rna-seq
#limma
84
Views
How to interpret DESeq results with LRT vs. with Wald's test
Published on
31 December 2024 at 11:43
#r
#usage-statistics
#rna-seq
79
Views
Bam files generated with STAR cause a segmentation fault core dump error when used with another tool
Published on
31 December 2024 at 11:46
#mapping
#rna-seq
138
Views
make and cmake. installation not recognized
Published on
31 December 2024 at 11:39
#powershell
#cmake
#environment-variables
#rna-seq
#genomics
1.2k
Views
Error loading paramSweep_v3 in DoubletFinder in R
Published on
31 December 2024 at 11:41
#r
#genome
#seurat
#rna-seq
1.1k
Views
Add black outline for different geom_point shapes on DESeq2 PCA
Published on
31 December 2024 at 11:43
#r
#ggplot2
#pca
#rna-seq
154
Views
How to plot values by row in pheatmap?
Published on
06 January 2025 at 12:06
#r
#pheatmap
#rna-seq
1.5k
Views
Pull out genes/observations from cutree_rows groups in pheatmap
Published on
06 January 2025 at 12:10
#r
#heatmap
#hierarchical-clustering
#pheatmap
#rna-seq
91
Views
Error Pegasus package: TypeError: highly_variable_features() got an unexpected keyword argument 'consider_batch'
Published on
31 December 2024 at 11:46
#python
#rna-seq
460
Views
Differential expression analysis- basemean threshold
Published on
31 December 2024 at 11:41
#r
#bioinformatics
#rna-seq
114
Views
Subscript out of bounds error for run_viper with dorothea regulons in R
Published on
31 December 2024 at 11:44
#r
#rna-seq
#viper
799
Views
How to create a regex expression to get a substring between 2 pipes
Published on
31 December 2024 at 11:43
#r
#string
#bioinformatics
#rna-seq
90
Views
WildcardError in Snakefile
Published on
31 December 2024 at 11:37
#bioinformatics
#snakemake
#rna-seq
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