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20
55
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DESCEND's function 'selectGenes' takes forever to finish on sparse matrix, and also shows no error message

Published on
#r #cluster-analysis #sparse-matrix #rna-seq
26
Views

Complication with clustree image generation

Published on
#r #bioinformatics #resolution #hierarchical-clustering #rna-seq
103
Views

Nextflow script to check adapter content and run trimmomatic

Published on
#bash #nextflow #rna-seq
54
Views

WDL run through input text file and sub into command

Published on
#bash #rna-seq #wdl
103
Views

Error in MouseRNAseqData() ( scRNA seq analysis)

Published on
#rna-seq
222
Views

Issue with CellCycleScoring in Seurat Saying 'Rowmeans' subscript is out of bounds

Published on
#r #cell #seurat #rna-seq
29
Views

"no such file or directory" - but lists a file location that has not been specified

Published on
#r #rstudio #rna-seq #sequencing #nomachine
145
Views

Limma/DESeq2 for unbalanced nested design (paired samples)

Published on
#r #rna-seq #limma
48
Views

How to interpret DESeq results with LRT vs. with Wald's test

Published on
#r #usage-statistics #rna-seq
43
Views

Bam files generated with STAR cause a segmentation fault core dump error when used with another tool

Published on
#mapping #rna-seq
131
Views

make and cmake. installation not recognized

Published on
#powershell #cmake #environment-variables #rna-seq #genomics
1.2k
Views

Error loading paramSweep_v3 in DoubletFinder in R

Published on
#r #genome #seurat #rna-seq
1.1k
Views

Add black outline for different geom_point shapes on DESeq2 PCA

Published on
#r #ggplot2 #pca #rna-seq
145
Views

How to plot values by row in pheatmap?

Published on
#r #pheatmap #rna-seq
1.5k
Views

Pull out genes/observations from cutree_rows groups in pheatmap

Published on
#r #heatmap #hierarchical-clustering #pheatmap #rna-seq
82
Views

Error Pegasus package: TypeError: highly_variable_features() got an unexpected keyword argument 'consider_batch'

Published on
#python #rna-seq
448
Views

Differential expression analysis- basemean threshold

Published on
#r #bioinformatics #rna-seq
104
Views

Subscript out of bounds error for run_viper with dorothea regulons in R

Published on
#r #rna-seq #viper
791
Views

How to create a regex expression to get a substring between 2 pipes

Published on
#r #string #bioinformatics #rna-seq
80
Views

WildcardError in Snakefile

Published on
#bioinformatics #snakemake #rna-seq

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