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20
Devhide
2023-12-29T09:34:43.293000
64
Views
how to install pysam in vscode? "error with subprocess.py"
Published on
29 December 2023 at 09:34
#pysam
114
Views
How do i get and use AlignmentHeader from pysam?
Published on
22 December 2023 at 18:10
#bam
#pysam
249
Views
How do I fix the error when installing the pysam package?
Published on
13 December 2023 at 18:52
#python
#pip
#package
#console
#pysam
19
Views
Where can I get the time series mentioned in the exampkle "working-with-csp.ipynb"?
Published on
12 October 2023 at 13:03
#pysam
38
Views
Converting nested tuple 0 into row in matrix
Published on
10 July 2023 at 06:58
#python
#dictionary
#tuples
#pysam
31
Views
Error in installing of pysam (error to build HSTlib) during of CNVkit installation
Published on
13 June 2023 at 08:41
#linux
#installation
#pysam
51
Views
PySAM import failure on python3.11 macbookPro M2
Published on
23 May 2023 at 07:20
#installation
#pysam
107
Views
Pysam view yield reads one at a time
Published on
16 May 2023 at 15:58
#python
#bioinformatics
#samtools
#pysam
155
Views
MapDamage [E::fai_retrieve] Failed to retrieve block: unexpected end of file, in snakemake pipeline
Published on
14 April 2023 at 14:40
#python
#data-retrieval
#pysam
686
Views
sum elements in python list if match condition
Published on
26 November 2022 at 15:38
#python
#bam
#pysam
195
Views
Docker installation testing fails because of missing dependency which was installed earlier
Published on
21 November 2022 at 16:03
#python
#docker
#dockerfile
#pysam
#htslib
103
Views
Wrong plotting data (insert size vs base quality means from BAM file)
Published on
28 October 2022 at 09:23
#python
#matplotlib
#plot
#samtools
#pysam
442
Views
Cannot install pysam
Published on
03 June 2022 at 15:23
#python
#bash
#pip
#debian
#pysam
151
Views
Bam file processing function code with parseargs in Python and Ubuntu
Published on
17 September 2021 at 18:28
#python
#pandas
#argparse
#pysam
#bam
1k
Views
How to use pysam.view() to convert SAM to BAM
Published on
05 June 2021 at 11:39
#python
#sam
#samtools
#pysam
#bam
1.1k
Views
Snakemake Conda environment does not seem to be activating though it says it is
Published on
29 March 2021 at 23:56
#python
#conda
#snakemake
#samtools
#pysam
679
Views
How to add "OQ" tag with read quality score as additional field in the bam file using pysam
Published on
18 July 2020 at 11:28
#samtools
#pysam
389
Views
Deeptools cannot find file that exists
Published on
17 June 2020 at 10:01
#python
#io
#pysam
1.1k
Views
extract lines from bam file
Published on
31 March 2020 at 17:13
#python
#pysam
1.1k
Views
Command errored out with exit status 1: Python setup.py [...] When trying to install Pysam
Published on
15 March 2020 at 09:51
#python
#pip
#pysam
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