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20
709
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ValueError: error during iteration "Pysam"

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#python #pysam
3.7k
Views

Keep getting error incompatible library version libchtslib.so requires version 9.0.0 or later, but libcurl.4.dylib provides version 7.0.0

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#python #macos #terminal #pip #pysam
225
Views

How do I fix the error when installing the pysam package?

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#python #pip #package #console #pysam
94
Views

How do i get and use AlignmentHeader from pysam?

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#bam #pysam
2.3k
Views

Can't install pysam with pip in Python 3.6

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#python #pip #installation #pysam
1k
Views

How to use pysam.view() to convert SAM to BAM

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#python #sam #samtools #pysam #bam
1.1k
Views

How to use pysam.view to emulate all functions of samtools view

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#samtools #pysam
654
Views

How to add "OQ" tag with read quality score as additional field in the bam file using pysam

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#samtools #pysam
432
Views

Cannot install pysam

Published on
#python #bash #pip #debian #pysam
165
Views

Docker installation testing fails because of missing dependency which was installed earlier

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#python #docker #dockerfile #pysam #htslib
647
Views

sum elements in python list if match condition

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#python #bam #pysam
528
Views

Error message when use Python multiprocessing

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#python #parallel-processing #multiprocessing #pysam
335
Views

Changing an orientation of a reverse sequence in the fasta file doesnt work

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#python #python-2.7 #pysam
1.1k
Views

extract lines from bam file

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#python #pysam
1.5k
Views

Accessing Bam file at particular location using Pysam

Published on
#python #bioinformatics #python-module #biopython #pysam
29.4k
Views

unable to execute 'x86_64-conda_cos6-linux-gnu-gcc': No such file or directory (pysam installation)

Published on
#linux #python-2.7 #gcc #anaconda #pysam
1.9k
Views

manually installing pysam error: "ImportError: No module named version"

Published on
#python #linux #anaconda #conda #pysam
235
Views

Replace concatenation with join

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#python #bioinformatics #pysam
122
Views

Bam file processing function code with parseargs in Python and Ubuntu

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#python #pandas #argparse #pysam #bam
464
Views

Failed to install pysam 0.13

Published on
#python #c #gcc #pip #pysam

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