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20
Devhide
2025-01-01 21:30:33
9k
Views
In bioinformatics, what is a singleton?
Published on
01 January 2025 at 21:30
#bioinformatics
#samtools
178
Views
how to ouput sed/samtools result into new directory
Published on
04 December 2024 at 07:43
#sed
#samtools
650
Views
Oscillating processing speed in a python script using pysam.TabixFile to annotate reads
Published on
17 December 2024 at 07:14
#python
#performance
#python-3.x
#bioinformatics
#samtools
295
Views
How to most efficiently retrieve data from NarrowPeak (BED6+4) format files?
Published on
04 January 2025 at 14:13
#pandas
#bioinformatics
#samtools
72
Views
Corrupted sam file from bwa. [W::sam_parse1] mapped query cannot have zero coordinate; treated as unmapped
Published on
07 January 2025 at 02:13
#samtools
#burrows-wheeler-transform
94
Views
I made an error when using metawrap to binning
Published on
04 December 2024 at 07:42
#sequence
#binning
#samtools
168
Views
Medaka: unrecognized command 'tools' and samtools not found
Published on
04 December 2024 at 07:45
#ubuntu
#bioinformatics
#samtools
120
Views
Issue Installing Bowtie2 and Samtools on Mac M2
Published on
29 December 2024 at 06:32
#installation
#samtools
#apple-m2
#mambaforge
#bowtie2
2.6k
Views
Cannot sort VCF with bcftools due to invalid input
Published on
06 January 2025 at 13:26
#sorting
#vcf-variant-call-format
#samtools
#bcftools
96
Views
I have 2 bash loops with the same structure and only the first works
Published on
05 January 2025 at 20:35
#bash
#for-loop
#samtools
637
Views
How to retain reads on only an certain size in a bam file?
Published on
06 January 2025 at 13:01
#bioinformatics
#samtools
#bam
682
Views
Piping commands withing GNU parallel (samtools)
Published on
04 December 2024 at 07:41
#pipe
#gnu
#gnu-parallel
#samtools
130
Views
seqff script got trouble after samtools treatment
Published on
04 December 2024 at 07:42
#r
#bioinformatics
#samtools
198
Views
How to install Bioinformatics libraries like trimmomatic, bowtie2, samtools, seqtk etc. in AWS linux OS?
Published on
04 December 2024 at 07:50
#amazon-web-services
#ubuntu-18.04
#bioinformatics
#amazon-linux-2
#samtools
1.4k
Views
executing samtools in terminal: "command not found", but it is installed
Published on
18 December 2024 at 14:18
#terminal
#samtools
1k
Views
How to use pysam.view() to convert SAM to BAM
Published on
06 January 2025 at 01:31
#python
#sam
#samtools
#pysam
#bam
1.1k
Views
How to use pysam.view to emulate all functions of samtools view
Published on
10 December 2024 at 04:02
#samtools
#pysam
191
Views
MissingOutputException snakemake
Published on
06 January 2025 at 12:58
#snakemake
#samtools
#bam
132
Views
Extracting information from a file using another file with list of specific text; Ubuntu/ Linux
Published on
04 December 2024 at 07:50
#bash
#bioinformatics
#fasta
#samtools
652
Views
How to add "OQ" tag with read quality score as additional field in the bam file using pysam
Published on
10 December 2024 at 04:10
#samtools
#pysam
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