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20
814
Views

Escape backslash with sed command when the next character is "t"

Published on
#bash #sed #escaping #backslash #bcftools
71
Views

Merging VCF Files and Expanding Metadata Efficiently

Published on
#python #optimization #bioinformatics #vcf-variant-call-format #bcftools
196
Views

How can I retrieve all variants only for a specific gene from VCF file using BCFTools?

Published on
#bioinformatics #bcftools
125
Views

BCFtools merge command collapsing non-identical variants to single record

Published on
#merge #vcf-variant-call-format #bcftools
2.6k
Views

Cannot sort VCF with bcftools due to invalid input

Published on
#sorting #vcf-variant-call-format #samtools #bcftools
135
Views

bcftools make fails with numerous vcfmerge errors in win10

Published on
#compiler-errors #vcftools #bcftools
2.5k
Views

Combine multiple VCF files into one large VCF file

Published on
#bioinformatics #vcftools #bcftools #hail #vcf-variant-call-format
879
Views

How to know whether a unix command execution is successful

Published on
#linux #shell #unix #vcftools #bcftools
71
Views

Globbing a filename and then saving to a variable

Published on
#bash #variables #glob #bcftools
455
Views

Bash script using gzip and bcftools running out of memory with large files

Published on
#bash #memory #google-cloud-platform #gzip #bcftools
119
Views

Bcftools 1.16 able to add F_MISSING tag?

Published on
#snakemake #bcftools
687
Views

How to use plugin commands in bcftools?

Published on
#plugins #environment #vcf-variant-call-format #bcftools
584
Views

Running a loop over multiple file types using bcftools and awk to subdivide files

Published on
#loops #awk #gnu-parallel #vcf-vcard #bcftools
1.4k
Views

Output format of bcftools view

Published on
#zip #compression #gzip #bcftools
2.2k
Views

Fixing segmentation fault error in bcftools

Published on
#segmentation-fault #bioinformatics #vcf-variant-call-format #bcftools
67
Views

removing text part between 2 symbols

Published on
#bash #genome #bcftools
128
Views

match 1,2,5 columns of file1 with 1,2,3 columns of file2 respectively and output should have matched rows from file 2. second file is zipped file .gz

Published on
#linux #awk #vcftools #bcftools
52
Views

How to sort entries with the same ID based off their allele frequency (AF) in a vcf file

Published on
#bioinformatics #vcf-variant-call-format #bcftools
381
Views

how can I transform a view from three.js camera and scene to a bcf cameraview

Published on
#javascript #three.js #bcftools
1.8k
Views

Makefile - samtools installation failed

Published on
#makefile #installation #bioinformatics #samtools #bcftools

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