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base recalibrator --known-sites argument does not work

score 255 · Answer 1 · 2023-10-16 23:34:35

255

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base recalibrator --known-sites argument does not work

Published on 16 October 2023 at 23:34

score 270 · Answer 2 · 2023-10-19 21:18:54

270

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score 29 · Answer 3 · 2023-11-07 08:50:05

29

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Published on 07 November 2023 at 08:50

score 61 · Answer 4 · 2022-12-23 18:51:37

61

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How do I use this python function within the params section of my Snakemake rule?

Published on 23 December 2022 at 18:51

score 178 · Answer 5 · 2021-09-16 13:35:47

178

Views

snakemake multiple parameters for multiple input and single output in snakemake. ConbineGVCFs gatk problem

Published on 16 September 2021 at 13:35

score 103 · Answer 6 · 2021-09-30 13:24:59

103

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Published on 30 September 2021 at 13:24

score 16 · Answer 7 · 2023-08-04 10:31:26

16

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GATK Variant Filtration file Anopheles gambiae s.s

Published on 04 August 2023 at 10:31

score 65 · Answer 8 · 2023-08-03 16:03:02

65

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New: Fatal error compiling: java.lang.NoClassDefFoundError: com/sun/tools/javac/main/OptionName: com.sun.tools.javac.main.OptionName

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score 1k · Answer 9 · 2021-12-10 20:36:48

1k

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score 1.4k · Answer 10 · 2021-12-13 23:14:12

1.4k

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Published on 13 December 2021 at 23:14

score 846 · Answer 11 · 2018-05-01 13:24:25

846

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score 455 · Answer 12 · 2015-09-16 09:25:59

455

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score 2.6k · Answer 13 · 2021-07-17 08:55:11

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score 188 · Answer 14 · 2021-12-29 10:09:42

188

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score 2k · Answer 15 · 2022-01-21 12:11:35

2k

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Published on 21 January 2022 at 12:11

score 322 · Answer 16 · 2022-01-20 09:01:49

322

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Error running gatk HaplotypeCaller with allele specific annotations

Published on 20 January 2022 at 09:01

score 51 · Answer 17 · 2022-02-03 11:46:47

51

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Snakemake first genotype of a vcf file as wildcard in output

Published on 03 February 2022 at 11:46

score 558 · Answer 18 · 2022-02-04 11:12:36

558

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Snakemake integrate the multiple command lines in a rule

Published on 04 February 2022 at 11:12

score 572 · Answer 19 · 2022-02-09 17:17:48

572

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Published on 09 February 2022 at 17:17

score 20 · Answer 20 · 2024-01-16 17:54:13

20

Views

I dont get the output file to "gatk CollectAlignmentSummaryMetrics" that use to get alignment and insert size metrics in variant calling process

Published on 16 January 2024 at 17:54

List Question

base recalibrator --known-sites argument does not work

Parsing FORMAT and sample value fields from VCF file

Troubleshooting GATK Pipeline Error in AWS ParallelCluster Environment and Spark

How do I use this python function within the params section of my Snakemake rule?

snakemake multiple parameters for multiple input and single output in snakemake. ConbineGVCFs gatk problem

What does 'NEGATIVE_TRAIN_SITE' in VQSR mean?

GATK Variant Filtration file Anopheles gambiae s.s

New: Fatal error compiling: java.lang.NoClassDefFoundError: com/sun/tools/javac/main/OptionName: com.sun.tools.javac.main.OptionName

gatk VariantRecalibrator positional argument error

Combine a directory of GVCF files with gatk CombineGVCFs

Getting GATK argument error and dont understand?

MuTect install: GATK-protected: maven: Java-compile-error

Running docker from bash script

Snakemake: create multiple wildcards for the same argument

How to run ensembl-vep in conda

Error running gatk HaplotypeCaller with allele specific annotations

Snakemake first genotype of a vcf file as wildcard in output

Snakemake integrate the multiple command lines in a rule

GATK: HaplotypceCaller IntelPairHmm only detecting 1 thread

I dont get the output file to "gatk CollectAlignmentSummaryMetrics" that use to get alignment and insert size metrics in variant calling process

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