Question

Combine multiple VCF files into one large VCF file

score 2.4k · Answer 1 · 2020-09-08 13:53:15

2.4k

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Combine multiple VCF files into one large VCF file

Published on 08 September 2020 at 13:53

score 98 · Answer 2 · 2020-09-10 10:28:50

98

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Parse .bgen files using HAIL without loading data on a single node

Published on 10 September 2020 at 10:28

score 342 · Answer 3 · 2022-03-16 11:44:02

342

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Unable to find the internal logging class: java.lang.NoClassDefFoundError: org/apache/spark/internal/Logging$class

Published on 16 March 2022 at 11:44

score 101 · Answer 4 · 2019-10-15 03:35:16

101

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Problems for Hail0.2 working on Azure DataBrick

Published on 15 October 2019 at 03:35

score 2.4k · Answer 5 · 2020-02-11 00:42:06

2.4k

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spark-submit error: Invalid maximum heap size: -Xmx4g --jars, but enough of memory on the system

Published on 11 February 2020 at 00:42

score 22 · Answer 6 · 2019-11-18 22:13:15

22

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Using ipython on a different linux account: command gets stuck

Published on 18 November 2019 at 22:13

score 96 · Answer 7 · 2019-11-20 22:45:02

96

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hail.utils.java.FatalError: IllegalStateException: unread block data

Published on 20 November 2019 at 22:45

score 516 · Answer 8 · 2019-11-27 23:19:52

516

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Run Luigi task that depends on another task

Published on 27 November 2019 at 23:19

score 24 · Answer 9 · 2019-11-26 16:08:25

24

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Access different type of preset target location in Luigi

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score 122 · Answer 10 · 2023-10-05 16:42:56

122

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Py4JJavaError: An error occurred while calling z:is.hail.backend.spark.SparkBackend.apply

Published on 05 October 2023 at 16:42

score 54 · Answer 11 · 2023-04-04 03:57:48

How to install VariantSpark to Google Colab - TypeError: SparkBackend__init__() got an unexpected keyword argument 'gcs_requester_pays_project'

score 247 · Answer 12 · 2020-06-30 12:56:35

247

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java.io.IOException: Stream is closed! Error in HDInsight with ADLS Gen 2

Published on 30 June 2020 at 12:56

List Question

Combine multiple VCF files into one large VCF file

Parse .bgen files using HAIL without loading data on a single node

Unable to find the internal logging class: java.lang.NoClassDefFoundError: org/apache/spark/internal/Logging$class

Problems for Hail0.2 working on Azure DataBrick

spark-submit error: Invalid maximum heap size: -Xmx4g --jars, but enough of memory on the system

Using ipython on a different linux account: command gets stuck

hail.utils.java.FatalError: IllegalStateException: unread block data

Run Luigi task that depends on another task

Access different type of preset target location in Luigi

Py4JJavaError: An error occurred while calling z:is.hail.backend.spark.SparkBackend.apply

How to install VariantSpark to Google Colab - TypeError: SparkBackendinit() got an unexpected keyword argument 'gcs_requester_pays_project'

java.io.IOException: Stream is closed! Error in HDInsight with ADLS Gen 2

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