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12
2.5k
Views

Combine multiple VCF files into one large VCF file

Published on
#bioinformatics #vcftools #bcftools #hail #vcf-variant-call-format
123
Views

Parse .bgen files using HAIL without loading data on a single node

Published on
#spark-streaming #genetics #genome #hail
378
Views

Unable to find the internal logging class: java.lang.NoClassDefFoundError: org/apache/spark/internal/Logging$class

Published on
#apache-spark #pyspark #gwas #hail
125
Views

Problems for Hail0.2 working on Azure DataBrick

Published on
#python-3.7 #azure-databricks #genome #hail
2.4k
Views

spark-submit error: Invalid maximum heap size: -Xmx4g --jars, but enough of memory on the system

Published on
#java #apache-spark #hail
47
Views

Using ipython on a different linux account: command gets stuck

Published on
#linux #apache-spark #permissions #miniconda #hail
123
Views

hail.utils.java.FatalError: IllegalStateException: unread block data

Published on
#java #apache-spark #master-slave #hail
542
Views

Run Luigi task that depends on another task

Published on
#apache-spark #luigi #hail
49
Views

Access different type of preset target location in Luigi

Published on
#apache-spark #luigi #hail
146
Views

Py4JJavaError: An error occurred while calling z:is.hail.backend.spark.SparkBackend.apply

Published on
#python #jupyter #hail
64
Views

How to install VariantSpark to Google Colab - TypeError: SparkBackend__init__() got an unexpected keyword argument 'gcs_requester_pays_project'

Published on
#apache-spark #hail
257
Views

java.io.IOException: Stream is closed! Error in HDInsight with ADLS Gen 2

Published on
#java #hadoop #azure-hdinsight #azure-data-lake-gen2 #hail

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