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List Question
20
Devhide
2025-01-06 04:24:24
683
Views
How to get consensus sequence from BAM file format on java (by means of Picard)
Published on
06 January 2025 at 04:24
#java
#media
#picard
97
Views
Why is Picard MarkDuplicates deleting .bam files in place of .bai files in my Snakemake workflow?
Published on
06 January 2025 at 04:25
#snakemake
#picard
1.4k
Views
How does one set the RAM and CPU parameters for java programs running in an anaconda environment?
Published on
06 January 2025 at 04:25
#java
#anaconda
#picard
685
Views
linux merge multiple files in picard
Published on
06 January 2025 at 04:19
#python
#linux
#variables
#for-loop
#picard
248
Views
MarkDuplicates Picard
Published on
03 January 2025 at 02:54
#rna-seq
#samtools
#picard
1k
Views
VCF4.2 file not recognised by GATK
Published on
06 January 2025 at 12:32
#bioinformatics
#vcf-variant-call-format
#vcftools
#picard
600
Views
R How to obtain the coefficients of a polynomial expression?
Published on
06 January 2025 at 04:22
#r
#vector
#picard
69
Views
Why doesn't subprocess.Popen() give live feed?
Published on
06 January 2025 at 04:20
#python
#python-3.x
#subprocess
#pipeline
#picard
358
Views
How to convert fastq to uBAM with picard dock on google cloud
Published on
06 January 2025 at 13:28
#google-app-engine
#google-cloud-platform
#google-genomics
#picard
85
Views
An interesting cron, bash, perl and java problem
Published on
06 January 2025 at 04:20
#java
#perl
#cron
#picard
574
Views
Is there a way to set parameters for the Java VM when using a Snakemake wrapper?
Published on
06 January 2025 at 04:24
#snakemake
#picard
32
Views
Reorganize music library with Picard or another program
Published on
06 January 2025 at 04:21
#metadata
#picard
57
Views
Does picard markduplicate toggle PCR duplicate samflag
Published on
06 January 2025 at 04:21
#bioinformatics
#samtools
#picard
688
Views
Picard SortSam speed up?
Published on
28 December 2024 at 23:04
#sorting
#bioinformatics
#picard
27
Views
How to run plugins on Picard as a developer
Published on
06 January 2025 at 04:20
#audio-player
#musicbrainz
#picard
533
Views
Unrecognized option: I picard.jar
Published on
06 January 2025 at 04:19
#bioinformatics
#fastq
#picard
759
Views
Unable to access jar file (installed in a conda virtual environment)
Published on
06 January 2025 at 04:22
#java
#bash
#jar
#bioinformatics
#picard
22
Views
issue with FreeBayes in the multibam version
Published on
06 January 2025 at 04:20
#vcf-variant-call-format
#samtools
#bam
#picard
1.1k
Views
Picard SamToFastq only extracts one read, then throws an error
Published on
06 January 2025 at 04:22
#bioinformatics
#dna-sequence
#fastq
#picard
#bam
780
Views
How to deal with trailing garbage caused from unzipping the hs37d5 fastq file
Published on
06 January 2025 at 04:24
#java
#gzip
#picard
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