Question

How to get consensus sequence from BAM file format on java (by means of Picard)

score 679 · Answer 1 · 2012-06-05 15:29:21

679

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How to get consensus sequence from BAM file format on java (by means of Picard)

Published on 05 June 2012 at 15:29

score 94 · Answer 2 · 2022-04-14 17:10:02

94

Views

Why is Picard MarkDuplicates deleting .bam files in place of .bai files in my Snakemake workflow?

Published on 14 April 2022 at 17:10

score 1.4k · Answer 3 · 2017-05-25 09:19:19

1.4k

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How does one set the RAM and CPU parameters for java programs running in an anaconda environment?

Published on 25 May 2017 at 09:19

score 681 · Answer 4 · 2017-12-22 03:07:53

681

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linux merge multiple files in picard

Published on 22 December 2017 at 03:07

score 240 · Answer 5 · 2021-02-19 17:18:28

240

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MarkDuplicates Picard

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score 1k · Answer 6 · 2013-11-12 16:04:16

1k

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VCF4.2 file not recognised by GATK

Published on 12 November 2013 at 16:04

score 597 · Answer 7 · 2018-12-18 17:29:30

597

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R How to obtain the coefficients of a polynomial expression?

Published on 18 December 2018 at 17:29

score 66 · Answer 8 · 2021-06-20 14:32:22

66

Views

Why doesn't subprocess.Popen() give live feed?

Published on 20 June 2021 at 14:32

score 350 · Answer 9 · 2018-06-10 12:01:06

350

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How to convert fastq to uBAM with picard dock on google cloud

Published on 10 June 2018 at 12:01

score 81 · Answer 10 · 2020-06-16 03:34:16

81

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score 570 · Answer 11 · 2019-01-17 00:12:56

570

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Is there a way to set parameters for the Java VM when using a Snakemake wrapper?

Published on 17 January 2019 at 00:12

score 28 · Answer 12 · 2023-06-02 05:17:03

28

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Reorganize music library with Picard or another program

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score 53 · Answer 13 · 2017-10-25 21:14:02

53

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Does picard markduplicate toggle PCR duplicate samflag

Published on 25 October 2017 at 21:14

score 678 · Answer 14 · 2017-10-27 15:23:36

678

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score 22 · Answer 15 · 2024-01-07 12:39:27

22

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score 529 · Answer 16 · 2016-07-21 09:18:28

529

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Unrecognized option: I picard.jar

Published on 21 July 2016 at 09:18

score 756 · Answer 17 · 2022-10-03 15:45:25

756

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Unable to access jar file (installed in a conda virtual environment)

Published on 03 October 2022 at 15:45

score 17 · Answer 18 · 2023-09-20 09:26:54

17

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issue with FreeBayes in the multibam version

Published on 20 September 2023 at 09:26

score 1.1k · Answer 19 · 2012-06-20 13:41:08

1.1k

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Picard SamToFastq only extracts one read, then throws an error

Published on 20 June 2012 at 13:41

score 776 · Answer 20 · 2015-09-23 12:51:58

776

Views

How to deal with trailing garbage caused from unzipping the hs37d5 fastq file

Published on 23 September 2015 at 12:51

List Question

How to get consensus sequence from BAM file format on java (by means of Picard)

Why is Picard MarkDuplicates deleting .bam files in place of .bai files in my Snakemake workflow?

How does one set the RAM and CPU parameters for java programs running in an anaconda environment?

linux merge multiple files in picard

MarkDuplicates Picard

VCF4.2 file not recognised by GATK

R How to obtain the coefficients of a polynomial expression?

Why doesn't subprocess.Popen() give live feed?

How to convert fastq to uBAM with picard dock on google cloud

An interesting cron, bash, perl and java problem

Is there a way to set parameters for the Java VM when using a Snakemake wrapper?

Reorganize music library with Picard or another program

Does picard markduplicate toggle PCR duplicate samflag

Picard SortSam speed up?

How to run plugins on Picard as a developer

Unrecognized option: I picard.jar

Unable to access jar file (installed in a conda virtual environment)

issue with FreeBayes in the multibam version

Picard SamToFastq only extracts one read, then throws an error

How to deal with trailing garbage caused from unzipping the hs37d5 fastq file

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